Paraburkholderia sabiae: QEN71_28295
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Entry
QEN71_28295 CDS
T09203
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psaa
Paraburkholderia sabiae
Pathway
psaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QEN71_28295 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psaa03021
]
QEN71_28295 (rpoC)
03400 DNA repair and recombination proteins [BR:
psaa03400
]
QEN71_28295 (rpoC)
Enzymes [BR:
psaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QEN71_28295 (rpoC)
Transcription machinery [BR:
psaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QEN71_28295 (rpoC)
DNA repair and recombination proteins [BR:
psaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QEN71_28295 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
WJZ73987
LinkDB
All DBs
Position
1:complement(6278123..6282364)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRSELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGMTFTGVSEALRAYENK
EVELASRVNVRITEMVHNEDTSEGAPKFVPKITLYATTVGRSILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLATEPVVDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYEAGSLLDEDSVEEIERLGIDEVRVRTPLTCETRYGLC
ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEALITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPLTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPNSEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQISDNGDTRFIPGEQVERSDMLDENDRMNAEDKRPATYENILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKTKEM
ADRERFDQIAAEEAFEFGTPENPAAEQTPHTNE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaggaagaagtttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgttcgtggtcgttcggtgaagtcaagaag
ccggaaaccatcaactaccgcacgttcaagccggagcgggatggtctgttctgcgcgaag
attttcggtccgatcaaggactacgaatgcctttgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtcgaagtgacgctcgcgaaggtgcgtcgcgaa
cgcatgggccacatcgaactggcctcgcctgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcatatgtggtgatcgatccgggcatgacgccgctgaaagcgcggcagatcatg
acggaagaggattactacaacaaggtcgaagagtacggtgacgaattccgcgctgaaatg
ggcgcggaaggcgtgcgcgaactgctgcgcgcgatcaacatcgacgaacaggtcgaaacg
ctgcgttcggagctgaagaacacgggttcggaagcgaagatcaagaagtacgcgaagcgt
ctgaaagtgctcgaggcattccagcgttcgggcatcaagcccgagtggatgattctcgaa
gtgctgcccgtgcttccgccggaactgcgtccgctggttccgctggacggcggccgtttc
gcgacctcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgcctgctcgaactgaaggcacctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgattcgctgctcgacaacggccgtcgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggtaagggcggtcgcttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgaagctgcaccagtgcggtctgcctaagctgatggcgctcgaactgttcaagccgttc
atcttcaacaagctggaagtgatgggtgtcgctaccaccatcaaggctgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacatcctggaagaggtgatccgcgagcatccg
gtgatgctgaaccgtgcgccgacgctgcaccgtcttggcattcaggctttcgagccggtg
ctgatcgaaggtaaggcaatccagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgttccgctgtcgctggaagcgcagatggaagcg
cgcacgctgatgctggcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctcggcctgtactacgcgacgcgtgaagcgatcaacggc
aagggcgaaggcatgacgttcacgggcgtgtcggaagcactgcgcgcctacgaaaacaag
gaagtcgagctggcctcgcgggtcaacgtgcggatcaccgaaatggtccacaacgaagac
acgtcggaaggcgcgccgaagttcgtgccgaagatcacgctgtacgcgacgacggtcggc
cgctcgatcctgtcggagattctgccgccgggtctgccgttctccgtgctgaacaagccg
ctgaagaagaaggaaatttcgcgtctgatcaacacggcattccgcaagtgcggtctgcgc
gaaacggtgatcttcgccgaccagctgatgcagtcgggcttccgcctggcaacgcgcgcc
ggtatctccatctgcgtcgacgacatgctcgtgccgccgcagaaggaaacgatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcaacgtcggaagcggtcggcaag
gcgatgatggagcagctcgccacggaacccgtggtcgatcgcgacggcaacgaaacgcgt
caggaatcgttcaactcgatctacatgatggccgactcgggcgcgcggggttccgcagtc
cagatccgtcagttggcggggatgcgcggcctgatggcgaagccggacggttcgattatc
gaaacgccgattaccgcgaacttccgcgaaggtctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctggtcgacgtcacgcaggatctcgtggtggtcgaggacgattgcggc
acgtcgaacggcgtggcgatgaaggccctcgtggaaggtggtgaagtcgtcgaagcgctg
cgcgaccgtattctcggccgtgtcgcggtggcagacgtcgttaatccggaaacgcaggaa
acgctgtacgaagcgggctcgctgcttgacgaagattccgtcgaagagatcgagcgtctg
ggcatcgacgaagtgcgcgtgcgcacgccgctgacctgcgaaacgcgttacggtctgtgc
gcgtcgtgctatggccgcgatctgggccgtggctcgctggtgaacgtcggcgaagcagtg
ggcgttatcgctgctcagtcgatcggtgagccgggcacgcagctgaccatgcgtacgttc
cacatcggtggcgcggcatcgcgtgcggcagtggcgtcgtcggtcgaagcgaagtcgaac
ggtacggtgcgtttcacggcgacgatgcgttacgtgacgaatgcaaagggcgagcagatc
gtcatctcgcgttcgggcgaagcgctcatcaccgatgatcacggccgcgagcgcgagcgt
cacaaggtgccgtacggcgcgacgctgctgcaactcgacggtgcgcagatcaaggcaggc
acgcagctggccacgtgggatccgctgacgcgtccgatcatcaccgagtggggcggtacg
gtgaagttcgaaaacgtcgaggaaggcgtgacggtcgcgaagcagatcgacgacgtgacg
ggtctttcgactctggtcgtgatcgacgtgaagcgccgcggttcgcaggcttcgaagagc
gtgcgtccgcaggtcaagctgctcgacgcgaacggcgaagaagtcaagatcccgaactcg
gagcactcggttcagatcggcttccaggtcggcgctctgatcaccgtgaaggacggtcag
caagtgcaggtcggtgaagtgctcgcacgtatcccgacggaagcgcagaagacgcgtgac
attacgggtggtctgccgcgtgtggcggaactgttcgaagcacgttcgccgaaggacgca
ggtatcctggcggaagtcacgggtacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgaaggcaatcagcacgagttcctgatcgcgaaggaaaag
caggttctggtccacgatggtcaggtcgtcaacaagggcgaaatgatcgtggacggaccg
gcggatccgcacgacatcctgcgtctgcagggtatcgaagcgctgtcgcgttacatcgtg
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgtcagatgctgcgtcgcgtgcagatttcggacaacggcgatacgcgcttc
atcccgggcgaacaggtcgagcggtcggacatgctcgacgagaacgaccgtatgaacgcg
gaagacaagcgtccggcaacgtacgagaacatcctgctgggtattacgaaggcgtcgctg
tcgacggattcgttcatctcggcagcatcgttccaggaaacgacgcgggtgctgacggaa
gccgcaatcatgggcaagcgcgacgatctgcgtggcctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgcgttccacaaggcgcgcaagaccaaggaaatg
gcggatcgcgagcgtttcgaccagatcgctgccgaagaagccttcgagttcggtacgccg
gaaaatccggccgccgagcaaacgccgcataccaacgagtaa
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integrated database retrieval system
