Proteiniphilum saccharofermentans: PSM36_2859
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Entry
PSM36_2859 CDS
T04672
Name
(GenBank) Hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psac
Proteiniphilum saccharofermentans
Pathway
psac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSM36_2859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psac03019
]
PSM36_2859
03400 DNA repair and recombination proteins [BR:
psac03400
]
PSM36_2859
Enzymes [BR:
psac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSM36_2859
Messenger RNA biogenesis [BR:
psac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSM36_2859
DNA repair and recombination proteins [BR:
psac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSM36_2859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
UvrD_C
Helicase_C
UvrD_C_2
AAA_30
AAA_22
Viral_helicase1
ResIII
PhoH
AAA_16
AAA_12
HTH_Crp_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SCD21654
UniProt:
A0A1R3TDF7
LinkDB
All DBs
Position
I:complement(3597491..3602308)
Genome browser
AA seq
1605 aa
AA seq
DB search
MEQSKIITFFDTEIDPNNHRILDIGSIKGNGERLHIASVKEFADFIAGTAYICGHNILTH
DLKYIAKEIPGLNNLNIIDTLYLSPLLFPAQPYHNLVKDDKLDPENYNNPLNDSIKAKNL
LYDEINEFAKLDEELKRIYYLLLANVKEFAGFFQYIDFSSNQINVAIEIRRKFEAEICSN
ADIEYLVNAYPVELAYCLALINARNRYSITPPWVLKNYPVAENVMFLLRNSPCITGCAYC
NSFLDVHKALKKYFGFDSYREYDGEALQENAVKAAVASKSLLAIFPTGGGKSLAFQVPAL
MAGESAKALTVVISPLQSLMKDQVDNLEKNGIIDAVTINGLLDPIQRAKSIERVEDGSAS
ILYLSPESLRSRTIERLLLGRKIARFVIDEAHCFSIWGQDFRPDYMYIADFIHLIQDNKQ
LDEPIPVSCFTATAKQKVIEDIRDYFSKKLSLDLDLFVSGTSRSNLHYMVFNNENDDEKY
NTLRNLIDSKDCSIIVYTSRTYRATKLAERLCDDGFSARVYHGKMDVKQKKENQDAFMSG
EVRVIVATSAFGMGVDKKDVGMVIHYEISDSLENYVQEAGRAGRDENITADCYVLFNEQD
LDKHFTLLNQTKLNIKEVQQIWKAIKELTGFRSTISNSALEIARKAGWDDNLAEIETRVK
SAIAALEDVGYLKRGQNMPRIFANSILTKNAEDAIIKIRNSPHFDDKQEVQATRIIKKLF
SNKSHRHASDEVAESRVDYISDHLGIVREDVIRIINLMREEEILADAKDLTAFIRKNEKQ
NQSLFILETYSKIENFLLSALDEQGATYNLKVLNEGAGQEGCRNVSTDKIKTIINFWDIK
KWIKRERYENYNNSPNHVSIAFKEPKDKIKELLEKRQELSKFILEYIFEKNKKAIQDTAG
DEMLVEFSVLELKSEYEKAQMLFKLEITFDDIEDALFYLSRIESIKIEGGFLVVYNKLTV
ERLEKNNSKRYTTDDYEKLDRFYKNKIEQIHIVGEYAKKMIRGYKEALLFVEDYFQLNHA
SFLNKYFSNSRQNELKRNITPTKFRQIFGELSTEQLKIIKDSKSKYIVVAAGPGSGKTKV
LVHKLASLLLMEDVKHEQLLMLTFSRAAATEFKKRLIKLIGNAAYFVEIKTFHSFCFDLL
GFVGNVEKSEDIVRIATEKIKSRDIELSKITKTVLVIDEAQDMSADEFSLIRALMEFNED
MRVIAVGDDDQNIYAFRGSDSKYMKSLIDEKESVKYELIENYRSKNNLVQFSNKFARKLT
HRLKKGPIIAVDNNNGKVRIVYYNNTDNLIVPLVNNICETGLRGTTCVLTRTNDEASLVA
GLLLKRGLKASLIQSNDSFNLYDLLEMRYFVEQINSDISSPKIGDHIWEKSKQELQKKFG
NSTKIEIVNRLIKEFEETNKYGKYKSDLALFIKESKLEDFLPQDGETIFISTMHKAKGQE
FDNIFLLLENFVLSGDEEKRLLYVAMTRAKQNLYLHLNGSYLNNINMESIERMVDFDMYG
QPDELRLHLSHKDVWLGYFMNRQWSLEKLVSGDELRVEGDTCFNLQNRPVLKFSQHFCSS
RLEPLLQKGYNLQSANVNFIVYWKNQDMDTEVKIILPELKFVKSR
NT seq
4818 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaagtaaaatcattactttttttgataccgaaattgatcctaataatcataga
atactagacattgggagtataaagggcaatggagaaagactccatattgcttcggttaag
gagtttgctgattttatagccggaacggcgtatatatgcggacataatatacttacacac
gatttaaaatacatcgcaaaagagataccgggtttgaataacctgaatataatagataca
ctttacctttcacctttattatttcctgcacaaccataccataacctggtaaaagacgat
aagctcgatcctgaaaactataataatccgcttaatgattcaataaaagccaaaaatcta
ttgtatgatgagataaacgaatttgcaaaattggacgaggaactgaagcgaatttattat
ttgctcttagccaatgtgaaagaatttgccggcttttttcagtatatcgatttctcttcc
aatcaaataaatgtagcaatagagatacgaagaaaatttgaagcggagatatgtagtaat
gcagatattgaatatcttgttaacgcatatccggtagaacttgcttattgccttgcactt
atcaatgcgagaaaccgttattcgatcacacctccatgggttcttaaaaattatcctgta
gcagaaaatgtgatgtttctgctacggaatagtccctgcattacaggttgtgcttattgc
aacagttttttagacgttcataaggcgttgaaaaaatatttcggtttcgactcttatcgt
gaatatgatggcgaggctttgcaggaaaatgccgtaaaggcggcagttgccagtaaatct
ctgcttgcaatattcccaacgggaggagggaaatcgctggccttccaggttccggcactt
atggcgggtgaaagtgcaaaagcgctgactgttgtgatctctccattacaatccttaatg
aaggaccaagtggataatctcgagaagaacggtatcattgatgctgttaccattaacggg
ttgctggatccgattcaaagggcgaaatcgatagaaagagtggaagatggctctgcatcg
attttgtatctctcacccgaatcattgcggtcaagaacgatagaacgcttattactgggc
aggaaaatcgcccgcttcgtgattgatgaagcacattgtttctctatctggggacaggat
ttcaggccggattacatgtatatcgctgattttatacacttgatccaggataataaacaa
ctcgatgaaccgatacctgtctcctgttttacagctactgcaaagcaaaaagtaatagaa
gacataagggattatttcagcaaaaaactttcgcttgatcttgatctttttgtctccggt
acttcaaggtcgaatcttcattatatggtattcaataatgaaaatgacgatgaaaaatac
aatactctacgaaatcttatcgactcgaaagattgttcgattattgtatatacttccaga
acctatcgagccactaaattagccgaaagattatgcgacgatggtttcagcgcaagggtt
taccatggaaaaatggatgtgaagcagaaaaaggagaatcaggatgcttttatgtcgggg
gaagtcagggtaattgtggctacctctgcttttgggatgggagtcgacaagaaagatgtg
gggatggtgatccattatgagatttctgattctctggagaattatgtgcaggaagccggc
cgcgcgggtcgagatgagaatattaccgccgattgttacgtcttattcaacgagcaggat
ctggacaaacatttcaccttgctcaaccagacaaaactcaacattaaagaggtgcaacaa
atctggaaagcgatcaaagaacttaccggtttcagatcgacaatatccaattcagctttg
gagattgcccggaaagcaggatgggatgataacctggccgagatagaaacacgggtcaag
tcggcaatagcagcactcgaagatgtaggatatttaaaacgaggtcaaaatatgccccgg
atttttgccaacagtattctcacgaaaaatgcggaggatgcgattataaagatccggaat
tctccacatttcgacgacaagcaggaggtacaggcgacaaggataatcaaaaaactgttt
tcaaataaaagtcatagacatgcttcagatgaagtggccgagtcgcgtgtcgattatatt
tccgatcatttgggtattgtccgggaggatgtcatacgcatcataaacttgatgcgtgaa
gaagagatattggcggatgcaaaagatctcaccgcttttatccggaaaaatgaaaaacag
aaccaatcacttttcatactggaaacatacagcaagatagagaattttttgttgtcggca
ttggatgaacagggggcaacgtacaatctgaaggtactgaacgagggtgcgggacaggag
ggatgtaggaatgtctctaccgataagataaaaacgatcatcaacttttgggatataaag
aaatggatcaaacgggaacggtacgagaattacaataattccccaaaccatgtctcgata
gcttttaaggagccgaaggataaaataaaggaactgcttgaaaaaagacaggaactctcg
aaattcattctggaatatatttttgagaaaaataaaaaggcaattcaggatactgcagga
gatgaaatgttggtcgagttttcggtgctggaattgaaaagcgaatacgaaaaagcgcag
atgctttttaaactggaaattacctttgatgatatagaggatgccctcttttatctttcc
cgtattgaatctatcaaaattgaaggtggttttcttgtcgtctataacaagcttacggtt
gaaaggttagagaaaaataattccaagcgttatacgactgacgattatgagaaactcgat
cgattctacaaaaataaaatagagcagatacatattgttggcgagtatgccaagaagatg
ataagggggtataaggaagcgctattatttgtggaggattacttccaactgaaccatgcc
tcttttctgaataaatatttcagtaacagcaggcaaaatgagttgaaaagaaatattact
cctactaagttcagacagattttcggtgaattatccacggagcaattaaaaatcataaaa
gacagcaagtcgaaatatatcgttgttgctgcgggcccgggaagcgggaagacaaaagtg
ttggtgcataaacttgcctcgttgctgttgatggaagatgtgaaacatgagcagttgttg
atgcttacgttctcacgggcggccgccaccgagtttaagaaacgactgataaaactgatc
ggtaatgccgcatattttgtggaaataaaaacttttcattctttttgctttgatttattg
ggatttgtcggaaatgtggagaaatcagaggatatagtccgcatagcaaccgaaaaaata
aaaagccgtgatatagaattaagcaagataacgaaaacggttttagtgatcgatgaagcg
caagatatgagcgctgatgaattttctttgataagagccttgatggaattcaatgaagat
atgcgtgtgatagctgttggtgacgacgatcaaaatatctatgccttcaggggatccgat
tcaaagtatatgaaatcgttgatagatgaaaaagagtcggtgaaatacgagctgatagag
aactacagaagtaaaaataatctcgtgcaattctcgaataaatttgcacgaaaactcact
cacaggcttaaaaaaggcccgatcatcgctgttgataacaataatggaaaagtaaggatt
gtatattataataatacggataaccttattgttccattggtgaataatatctgtgaaaca
ggactgagaggaactacctgtgtgcttacaaggactaatgatgaggcttccttggtggcc
ggacttttattgaaaagaggattgaaagccagtcttatacaatctaatgacagctttaat
ttatatgatttgctcgaaatgcgatattttgttgagcagataaattcagatatttcttca
ccaaaaataggtgatcatatctgggaaaaatccaaacaggagttacaaaaaaagtttggt
aatagtacaaagattgaaattgtaaatagacttataaaagaatttgaggagaccaataaa
tatggaaaatacaaatctgatttagctctgtttataaaagaatcgaagctcgaagatttc
cttccgcaagatggtgaaacgatatttatatcgaccatgcataaggcgaaaggacaggaa
tttgacaatatctttttacttttggaaaatttcgttctttctggcgatgaagaaaaacga
ttactgtatgtggcaatgacccgggcaaagcaaaatctttatcttcatctcaacggttcg
tatctcaataatataaatatggaatcgatagagagaatggtggattttgatatgtatggg
caacctgatgaactgcgcctccatttaagtcacaaagatgtatggctggggtattttatg
aataggcagtggagtctggagaagttggtcagtggggatgaattgagggttgaaggggat
acttgctttaacctccagaatcgaccggtattaaagttttcacaacatttttgttctagt
cgattggaacctttgttacaaaaaggatataatctccaatccgctaacgttaactttatt
gtatattggaaaaaccaggatatggatacggaggtgaagataattctcccagaactgaaa
tttgtgaaaagccggtag
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integrated database retrieval system
