Pseudoalteromonas sp. APM04: MTP24_14625
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Entry
MTP24_14625 CDS
T11363
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psad Pseudoalteromonas sp. APM04
Pathway
psad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTP24_14625 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psad03021
]
MTP24_14625 (rpoB)
03400 DNA repair and recombination proteins [BR:
psad03400
]
MTP24_14625 (rpoB)
Enzymes [BR:
psad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTP24_14625 (rpoB)
Transcription machinery [BR:
psad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTP24_14625 (rpoB)
DNA repair and recombination proteins [BR:
psad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTP24_14625 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UOB73321
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All DBs
Position
APM04_1:complement(3167800..3171825)
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AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFLVPDADGDHGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNARVIPYRG
SWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEEILDIFFDTTAFEVADGKVLMEL
VPSRLRGETAAFDIKGEDGEVLVESGRRVTARHIKSIEKKGITQLEVPHEYIIGRIISKN
YVDESTGEVIANANDELTLELMAELVKAGHTTIDTLYINEVDSGAYMSNTLNIDSSSNRL
EALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSTVGRMKFNSRVGYDSDTGPGTL
SKEDIVSVMKVLIAIRNGQGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVT
DEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKDSGVTIVAKR
GGEVMYADASRIVVNVHEEERIPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVTRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTIHIQELQCVA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEAGVLERARKLLVAAGFDENNLVSLNAEKLLTQSLAEEDKQAELEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERLEEMMKEQRELHE
LREFIKQAYEIGESRQVVDIASFSDDEIRRLAENLKGGLPIATPAFDGAKEDEIKDMLEL
GGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEN
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggatataccttttttactgtctacacagttagaatcgtttaaaaaattcttagtg
ccggacgctgatggcgatcatggtttggaagctgccttccgttctgtgttccctataaaa
agctactcgggaaattctgagcttcaatacgtaagttaccgtattggtgagccagttttc
gatgtaaaagaatgtcaaattcgcggtgtgacttattctgctccacttcgcgtgaaactg
cgtcttgttgttatggacaaagaagctccaggcacagttaaagacattaaagagcaagaa
gtttacatgggcgaaattccgctcatgaccgataccggtacctttgtaatcaatggtaca
gagcgtgttatcgtttctcagctacaccgtagccctggtgtattctttgataacgaccgc
ggtaaaactcattcatcaggtaaagtattatataacgcacgcgttattccttaccgtggt
tcatggttagacttcgaatttgatgcaaaagataacttatatgtacgtattgaccgccgt
cgtaaattaccggcgtctatcatcttacgtgcacttgagtactctagtgaagaaatccta
gatatcttcttcgatactactgcgtttgaagtagctgacggtaaagttctaatggaactt
gtaccttcacgtttacgtggtgaaactgccgcttttgatatcaaaggcgaagacggtgaa
gtacttgttgaaagcggtcgtcgtgttacggctcgtcacatcaagagtatcgagaaaaaa
ggcattactcagttagaagtacctcatgagtacatcattggccgtattatttctaaaaac
tacgttgatgaatcaacgggtgaagttattgcaaatgcgaatgatgaattaactcttgag
cttatggctgaattagttaaagccggtcacactaccattgatacgttgtacatcaatgaa
gtggacagcggtgcttacatgtcaaatacattgaacattgactcttcaagcaaccgttta
gaagcactagtagaaatttatcgcatgatgcgcccaggcgagccaccgacgaaagacgcg
gctgaagccttattccaaaacttgttcttctctgaagaacgttacgacctatcaactgtt
ggtcgtatgaagtttaatagccgtgttggttacgattctgacacaggcccaggcacatta
agcaaagaagacatcgtgtctgttatgaaagtattaattgctattcgtaacggtcaaggc
gatgttgatgatatcgaccacttaggcaaccgtcgtatacgtagtgttggcgaaatggct
gagaaccaattccgtgttggtctagtacgtgtagaacgtgctgtacgtgagcgtttaagc
ttaggtgaccttgacgcgataatgccacaagatcttattaacgctaagcctatttcggca
gcggttaaagagttcttcggctcgtctcagttatcacagtttatggaccaaaataacccg
ctatcagaagtaacgcataagcgtcgtatttctgcattaggtccgggcggtctaacacgt
gagcgcgctggctttgaagtacgtgacgttcacgtaactcactacggtcgcgtatgtcca
atcgagactcctgagggtccaaacatcggtctaattaactcattgtctacgtacgcacgt
acaaatgactacggtttcttagaaacaccttaccgcaaagtggtagacggtgtagtaact
gatgaagttgattacttatcagccattgaagaaggtcagtttgttatcgcacaggcaaac
tcaaacttaactgaaaccaatgagtttgtagatgaacttattccatgtcgtcacaaaggt
gaatcaacctttatgggccgcatggaccagcaatatatggatgtatcaccacaacaggtg
atctctgtagcagcagcacttatcccgttcctagaacacgatgatgctaaccgcgcattg
atgggttcaaacatgcaacgtcaagcagtaccaacattgaaagcggataagccgttagta
ggtacaggtattgagttaacactagcgaaagattctggtgtaacgattgttgcaaaacgt
ggtggtgaagtaatgtatgccgacgcaagtcgcatcgttgtaaacgtacatgaagaagaa
cgcatccctggtgaagcgggtatcgacatatacaacttaaccaagtacacacgttctaac
caaaatacatgtattaaccaaaaaccaacgtgcatggttggtgaaccggttactcgtggt
gacgtgttagcagatggtccttcgactgacttaggtgacttagcccttggtcaaaacctt
cgcgtggcattcatgccatggaacggttataacttcgaggattcaatcttactatcagag
cgcgtagttgaagaagatcgtttaacgactatccacattcaagaactacagtgtgttgcc
cgtgacactaaattaggtccagaagagatcactgcagatatccctaacgtgggtgagtct
gcactaggcaagcttgatgaatcaggcgttgtttatattggtgctgaagttaaaggcggc
gatattctagtaggtaaagtgactccgaaaggcgaaacacagcttacacctgaagagaag
ctactgcgtgctatcttcggcgaaaaagcatctgacgttaaagacagctctttacgtgta
ccaaactctgtaactggtacagtaattgacgtgcaagttttcacccgtgatggcgttgaa
aaagataagcgtgcgttagaggttgaagacatgcagcttcgcgaagcgaagaaagacttc
aacgaagagttccgtattcttgaagctggcgttttagaacgcgctcgtaagctacttgta
gctgcaggctttgatgaaaacaacttagtgtcattaaatgctgaaaaactattaactcaa
agccttgctgaagaagataagcaagctgaacttgagcaactagctgcacagtacgatgaa
cttaaagctgaatacgataagaagtttgaaaacaaacgtcgtaaaattactcaaggtgat
gacttagcaccaggcgtacttaaaattgttaaagtatacctagctgttaaacgtcgtatc
caaccgggtgataaaatggcgggtcgtcacggtaacaaaggtgttatctcgactatcgta
ccagtagaagatatgccatacgatgataaaggtcgtacggtagatatcgtactaaatcca
ctaggtgtaccatcgcgtatgaacatcggtcagatccttgaaacacatatgggtcttgct
gcacgtggtatcggtgaacgtttagaagaaatgatgaaagagcaacgtgagcttcatgag
ctacgtgaattcatcaagcaagcttacgaaattggtgaatctcgccaagttgtagacatt
gcaagtttctctgatgacgaaattcgtcgcctagctgaaaacttaaaaggtggtttacca
atcgctactcctgcatttgatggcgctaaagaagacgaaatcaaagacatgctagagctt
ggtggataccctagaagtggtcaggttacactttatgatggccgtactggcgatcagttt
gaacgtcaagtaactgttggttacatgtacatgcttaaacttaaccacttggttgatgat
aagatgcacgcacgttctactggttcttacagccttgttactcagcagccgctgggtggt
aaagcacagttcggtggccagcgttttggtgagatggaagtatgggcactagaagcttac
ggtgctgcttacactctacaagaaatgcttacagtgaaatcggatgacgtgaatggtcgt
actaagatgtataaaaacatcgttgatggtaaccacaagatggaaccaggtatgccagaa
tcgttcaacgtattgttgaaagaaatccgctcactgggtatcaacatcgagttggaagaa
aattaa
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