Pseudomonas salmasensis: HU731_012770
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Entry
HU731_012770 CDS
T07619
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psam
Pseudomonas salmasensis
Pathway
psam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HU731_012770 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psam03021
]
HU731_012770 (rpoB)
03400 DNA repair and recombination proteins [BR:
psam03400
]
HU731_012770 (rpoB)
Enzymes [BR:
psam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HU731_012770 (rpoB)
Transcription machinery [BR:
psam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HU731_012770 (rpoB)
DNA repair and recombination proteins [BR:
psam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HU731_012770 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QXH80621
LinkDB
All DBs
Position
complement(2864674..2868747)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET
LKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtcccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgtggcgttacgtacgccgtacctttg
cgggtaaaagtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggcgaaatcccattgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggcaaactcctgtactccgcgcggatc
attccgtaccgcggttcgtggttggacttcgagttcgacccgaaagattgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcttcggtattgctgcgcgcgctcggttacacc
actgagcaggtgctggacgctttctacaccaccaacgtattcagcctgaaggatgaaacc
ctcaagctggagctgatcgcttcgcgtctgcgtggtgaaattgctgtcctggacatccag
gacgaaaaaggcaaggtcatcgttgaggctggccgtcgtatcactgcgcgccacatcaac
cagatcgaaaaagccggtatcaaagagctggaagtgccactggactacgtcctgggtcgc
actaccgccaaggtcatcgttcacccggctacaggcgaaatcctggctgagtgcaacacc
gagctgaacactgaaatcctggccaagatcgccaaggctcaggttgttcgcatcgagacc
ctgtacaccaacgatatcgactgcggtccgttcatctccgacacactgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggtgagcca
ccaaccaaagacgctgccgaaaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtattgaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgt
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctttcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgtgtttctgcactgggcccg
ggcggtctgacccgtgagcgtgctggctttgaagtccgtgacgtacacccgacgcactac
ggtcgtgtttgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gctgcctatgcgcgcaccaaccagtacggcttcctcgaaagcccgtaccgtgtggtgaaa
gacgccctggtcaccgacgagatcgtattcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaggtcctggtcgacgagctggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgtt
tctccgaagcaggtagtttcggttgcagcgtcgctgatcccgttcctggaacacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaagctgtaccgaccctgcgtgct
gacaagccgctggtaggtaccggcatggagcgcaacgtagcgcgtgactccggcgtttgc
gtcgtggctcgtcgtggcggtgtgatcgattccgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagtagaaactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtaagcaagggtgat
cgcgttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaagaagaccgcttcaccacgatccacattcaggaa
ctgacctgtgtggcacgtgataccaagcttgggcctgaggaaatcactgcagacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttatgtaggtgct
gaagttggcgctggcgacatcctggtcggtaaggtcactccgaaaggcgagacccaactg
acgccggaagagaagctgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgtgtacctaccggtaccaaaggtactgtcatcgacgtacaggtcttcacc
cgtgacggcgttgagcgtgatgctcgtgcactgtccatcgagaagacccaactcgacgag
atccgcaaggatctgaacgaagagttccgtatcgttgaaggcgcgaccttcgaacgtctg
cgttccgctctggtaggccacaaggccgaaggcggcgcaggcctgaagaaaggtcaggac
atcaccgacgaaatcctcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggcccaggcctatatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctctgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgtcggtcagatccttgaaacccacctgggcctcgcagccaaaggt
ctgggcgagaagatcaaccgtatgatcgaagagcagcgcaaggtcgcagacctgcgtaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggacaccttctcc
gaccaggaaatcctggatctggcgaagaacctgcgcggcggcgttccaatggctaccccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgttcgacggccgtaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
