Lathyrus oleraceus (garden pea): 127076885
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Entry
127076885 CDS
T08598
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127076885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127076885
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
127076885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_16
TPR_11
TPR_8
TPR_19
TPR_9
TPR_17
TPR_12
TPR_CcmH_CycH
ARM_TT21_C
BTAD
TPR_7
TPR_10
DB_JBP1
Motif
Other DBs
NCBI-GeneID:
127076885
NCBI-ProteinID:
XP_050874637
LinkDB
All DBs
Position
4:complement(501453370..501473600)
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AA seq
1179 aa
AA seq
DB search
MASPTNTTDEQDLFRRLQDSSDDASLHFDIGLLLWNKQHDQDAKEKAAQHFLLSAKLNPK
NGDSFKYLGHYYRSVSLDTQRALKCYQRAVAINPDDFESGEPLCDLFDQQGKDTLEVAVC
VQASQMSPKAFWAFRRLGFLLVHQKKWSEAVQSLQHAIRGYPTCADLWEALGLAYQRLGR
FTAAVKSYGRAIELDNKMVFALVESGNISLTLGQFKKGVEQFQQALEILPDCVPAQFGLA
LGLLSLAKDCINLGAYQWGASLLEEASGVARESARSFRNISCIWKLYADIQLAYARCNPW
IEEVQQLESNKEAFSASINSWRRTCFLAAGRAKFSYQRALHLSPWQANIYSDIAITSDLI
TSLSKNCKQDLSARQLAEKMSIGALLLEGHNYEFWVALGCLSDHNELNQHALIRGLQLNV
SLAVAWGYLGKLYLKADEKQLARQVFDRARSIDPGLALPWASMSAESYGSKESAPDEAFE
SCSRAVQIMPLAEFQIGLTKLALLSGHLASSQVFGAIQQAVQHSPHYPESHNLHGLVCEA
QKDYKSAATFYRLARHAVSIGSESNQNSRIMDISINLARSLSKAGNAADALQECENLKKE
GPLDEEGLQVYAFSLWQHGEYDLALSVAGSLASNLSSMKKASVASSICFISRLVYFICGL
DAVITSIIKMPKELFQSSKVSFVMSAINALDGQNRLGLVVSSTRCFLKYQEEISRMQFLI
ALGKLVKNGSDCLDIKSGIAYLRRALHMFPNCNLMRNLLGYLLLFSEELNDGHVATRCCK
LDNPDMSDQEGLKSAYDIHGAGAVACYATGNNNPKFTFPTCSKKCFSHPRAIKSLQKYIH
QKPWNHDARYLLVLNYLQKAREQRFPQHLCRTLNRLIQAALSNELYSKTEMNYQYRHFQL
LLCASEISLQCGNHTSCINDAKKASQLVLPDNYLFFAHLLLCRLYAMKDDHPNFQKEYAR
CLELRTDCHIGWICLKLMECQYELQIDSNAIDLSFEECIKRDGNSWDTWMAVYNLVRGVN
LLQKRDLVLAEEFVAQACSLAGFESCLFLCHGAICMELVRQHNSGHFLSRAIKSLTKVHE
LSLIPLPYASILLAQAEGSLGSKERWDRTLRLEWHNWSPEMRPAEVYFQMHLVARQLKVG
VSSKSSTESSQSPHRWVIRAIHMNPSCMRYWRVLQKLME
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggcctctccaacgaatactactgatgaacaagatcttttccgacgcttgcaggattcc
tcagacgacgcctctctacattttgacattggcttactcttgtggaataaacaacacgac
caagatgcaaaggaaaaagctgctcaacattttctcctttccgccaaattaaaccctaaa
aacggggattccttcaaatatctcggccattattatcgaagtgtttcccttgatacccag
agagctcttaagtgttaccagcgagcagttgctatcaatcctgatgatttcgagtctggg
gaacctctctgtgatttatttgaccaacaaggaaaggacactctcgaggtcgcagtatgc
gtccaagcttctcaaatgtcacctaaggctttttgggctttccgcagattgggtttcctg
ctggttcatcaaaagaaatggtctgaagctgttcagagcctccaacatgctatacgaggc
tatcctacttgtgctgatttgtgggaagctctgggacttgcttatcagcggctgggcagg
tttactgcagctgtaaagtcttatggccgtgcaatcgagttggataataagatggtcttt
gctttggttgaaagtggaaatatctcgttgacacttggtcaatttaaaaagggggttgaa
caatttcaacaagctttggagattttgccagattgtgttcctgcacaatttggacttgct
ttgggtctgcttagtttggcaaaagattgcattaacctaggagcatatcagtggggagct
tcattgttagaggaagcatccggggttgccagagagagtgctcgttctttcaggaatatc
tcatgtatttggaaactatatgcagatattcagcttgcatatgcaagatgtaatccttgg
attgaggaggttcaacaattggaatctaataaggaagccttcagtgcttctatcaattca
tggaggaggacctgctttttggctgcaggacgtgctaaattttcgtaccaacgggcctta
cacttgtctccgtggcaagcaaacatctatagtgacattgcaataacttcagatcttatt
acctcattaagcaaaaattgcaaacaagacttaagtgcacggcagctagcagaaaaaatg
tctataggagccttgctacttgagggtcacaactatgagttctgggtggcattggggtgt
ttgtctgatcataatgaactaaatcagcatgctttgatcagaggactgcagttaaatgta
tctctagctgttgcttggggatatcttggaaagttgtatcttaaagcggatgaaaagcaa
ttggcaaggcaagtgtttgatcgtgcacgaagtatcgatcctggccttgcattgccatgg
gcgagcatgtcagccgagtcttacgggagtaaggagtctgcaccagatgaggcatttgaa
agctgttcccgagcagtgcagataatgcctttagctgaattccaaattgggctaactaag
cttgctttgctgagtggccatcttgcatcttcacaggtttttggagctattcagcaggct
gtgcagcattcccctcactatcctgaatcccataacttacatggcctggtatgtgaggct
caaaaagattacaagtctgctgctacattttataggttagcacgccatgcagttagcatt
ggctcagagagtaatcaaaactcacgtatcatggatatttctatcaatttggctagatca
ctttccaaggcagggaatgctgctgatgctttgcaggaatgtgaaaatttgaagaaagaa
gggccacttgatgaagaaggtttgcaagtgtatgctttctcgttatggcaacacggtgaa
tatgatttggctctctctgtagctgggagtcttgcttcaaatctttcttctatgaaaaaa
gcatctgttgcttcatccatttgtttcatcagtagattagtgtacttcatatgtggactg
gatgcagtcatcactagcattatcaagatgccaaaggagctatttcagagttcaaaagtt
agttttgttatgtcagctatcaatgctcttgatggacaaaatcgtcttggattggttgtc
tcaagtacccgatgttttctcaaatatcaagaagaaatttctaggatgcaatttttaata
gcgcttgggaaattggtgaaaaatggatctgattgccttgacattaaaagtggaattgcc
tacctcaggagagcactgcacatgtttcctaactgtaatttgatgaggaatcttctgggc
tatctcttgctatttagtgaagagctaaacgatggtcacgtggcaactaggtgttgtaaa
ctggataatcctgatatgtctgatcaagaaggtttaaaatcagcctatgatattcacggt
gctggagcagttgcttgctatgccaccggcaacaacaatccaaagtttacttttccaact
tgttcaaagaagtgtttcagtcatccacgagctatcaaatccctgcagaaatacattcat
cagaaaccatggaatcatgatgcccgatacttgcttgttcttaactatcttcagaaggca
cgtgaacaaagatttcctcaacatctttgccgtacactaaatcgtctaattcaagcagcc
ctttcaaatgaattgtatagcaaaacagaaatgaattatcaatataggcatttccaactt
ctactttgtgcttctgagatcagtttacaatgtggaaatcacacgagctgcatcaatgat
gccaaaaaggcttctcaacttgtgcttcctgataattatttattctttgcacatctacta
ttgtgccgtttgtatgccatgaaagacgatcatccaaattttcagaaagagtatgcaagg
tgtttggagctcaggacagattgtcatattggttggatctgtctcaaacttatggaatgc
caatacgaactgcagatcgattcaaatgccatagacttgagcttcgaagaatgcattaaa
agggatggaaattcatgggatacgtggatggctgtatataacttagtgagaggagtgaat
ttgttgcaaaaaagggatttagtcttagccgaagagtttgtggcacaggcttgttcattg
gcgggctttgaaagctgcctttttctatgtcatggtgccatctgtatggagcttgtgagg
cagcataatagtggtcacttcctatcacgggccattaagagccttaccaaagttcacgag
ctttcattgattcccttaccttatgcctcgatattattggcgcaagcagaaggaagcctc
ggttctaaagaaagatgggacagaaccctccgtcttgaatggcataattggtcaccagaa
atgaggcccgcagaggtatactttcaaatgcatttggttgcgagacagttgaaagttggg
gtgagctctaaatcaagcacagagtcctctcaaagtcctcatagatgggttattcgggca
atacacatgaacccttcttgcatgcgatattggagggtcttacagaagcttatggaataa
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