Pseudomonas syringae pv. syringae B728a: Psyr_4555
Help
Entry
Psyr_4555 CDS
T00246
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Psyr_4555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psb03021
]
Psyr_4555
03400 DNA repair and recombination proteins [BR:
psb03400
]
Psyr_4555
Enzymes [BR:
psb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Psyr_4555
Transcription machinery [BR:
psb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Psyr_4555
DNA repair and recombination proteins [BR:
psb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Psyr_4555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AAY39585
UniProt:
Q4ZMN7
LinkDB
All DBs
Position
complement(5412429..5416502)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRGEN
LSLELVPQRLRGEIAVLDILDDKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMGQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGRVAEGGAGLKKGQEITNEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLRNGVPMATP
VFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYCAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtaatggatgtgccgtatctcttggccatccagctggattcgtatcgcgaattcctgcag
gcgggagcgaccaaagatcagttccgcgacgtcggtctgcatgcagccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtatgtaggttatcgcttgggc
gaaccggcatttgatgtcaaggaatgcgtgctgcgcggtgtgacttacgcagtacctctg
cgagtcaaggtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatacccctgatgactgagaacggtaccttt
gtaatcaacggcaccgagcgcgttatcgtgtctcagctgcaccgttcgcctggcgtattc
ttcgaccacgaccgtggcaagacgcacagctccggtaagctgctgtactccgctcgtatc
attccttaccgcggttcgtggctggacttcgagttcgatccgaaagactgcgtattcgtc
cgtatcgaccgtcgtcgcaagctgcctgcgtccgtacttctgcgcgctctgggttacacc
accgagcaagtgctcgatgcgttctacaccaccaacgtattccatgtgcgcggtgaaaac
ctgagcctggaactggtgcctcagcgcctgcgtggtgaaattgccgttctggacatcctg
gacgacaagggcaaggtcattgtcgagcagggtcgtcgtatcactgcccgtcacatcaac
cagctggaaaaggccgggatcaaagagctggaagtgcctctggactacgtcctgggtcgc
actacagccaaggtcatcgtgcatccggcaaccggtgagatcattgccgagtgcaacacc
gagctgaacactgaaatcctggccaagatcgccaaggctcaggttgttcgtatcgaaacc
ttgtacaccaacgacatcgattgcggtccgttcgtctccgacacactgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgccgctgaaacactgttcaacaacctgttcttcagccctgagcgttat
gacctgtccgctgtaggtcgtatgaagttcaaccgtcgtatcggtcgtaccgaaatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtagcggtcctcaagaccctcgttgatatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctcggtaaccgtcgcgttcgttgc
gtaggcgagatggccgagaaccagttccgtgttggtctggtccgtgtcgagcgcgctgtc
aaagagcgtctgtccatggcagaaagcgaaggcctgatgcctcaggacctgatcaacgcc
aaacctgttgcggcggcggtcaaggagttcttcggttccagccagctttcccagttcatg
ggccagaacaacccgctgtccgagatcacgcacaagcgtcgtgtttccgcactcggccct
ggcggtctgacgcgtgagcgcgccggctttgaagttcgagacgttcacccgactcactac
ggccgtgtgtgcccgatcgagacgcctgaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcccgcaccaaccagtacggcttcctcgagagcccgtaccgtgtggtcaag
gaaggtctggtcaccgaagagatcgtgttcctttcagcgatcgaagaagcggatcacgtc
attgcccaggcttcggccgcaatgaacgacaagcaagagctgatcgacgaactggttgct
gtgcgtcacttgaacgaattcaccgtcaaggcgccagccgatgtcaccctgatggacgtt
tcgcccaagcaggttgtctcggtagctgcatcgctgattccgttcctcgagcacgatgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgttcctactctgcgcgcc
gacaagccgctggtaggtactggcatggagcgcaacgttgctcgcgactccggcgtttgc
gtcgtggctcgtcgcggtggtgtgatcgactcggttgacgccagccgtatcgttgttcgc
gttgccgatgatgaagttgaaacaggtgaggcgggtgtagacatctacaacctgaccaaa
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtcagcaagggtgac
cgtgttcagcgtagcgacatcatggccgacggcccgtccaccgatatgggtgaactggcg
ctgggtcagaacatgcgcatcgcgttcatggcctggaacggtttcaacttcgaagactcc
atctgtctttctgagcgtgttgttcaggaggaccgtttcaccacgatccacattcaggaa
ctgacctgtgtggcgcgtgataccaagcttgggccagaggaaatcacagctgacatccct
aacgtgggtgaagcggctctgaacaagctggacgaagcgggtatcgtttatgtaggtgcc
gaagtcggcgccggcgacatcctggtcggtaaggtcactccgaaaggcgagacccagctg
actccggaagaaaaactgttgcgcgcgatcttcggtgagaaggccagcgacgttaaagac
acctccctgcgcgtaccaaccggtaccaaaggtactgtcattgacgttcaggtcttcacc
cgtgatggtgtcgagcgtgatgcgcgtgccctgtccatcgagaagtcgcaactcgacgag
atccgcaaggatctgaacgaagagttccgtattgtcgaaggcgctactttcgaacgtctg
cgctctgcgctggtgggtcgtgtagctgaaggcggcgctggcctcaagaagggccaggaa
atcaccaacgaagtgctcgatggtcttgagcatggtcagtggttcaagctgcgcatggct
gaagatgctctcaacgagcagctcgaaaaagctcaggcttacatcgttgatcgtcgccgt
cttctggatgacaagttcgaagacaagaaacgcaaactgcagcagggcgatgacctggct
ccaggcgttctgaaaatcgtcaaggtctacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctctgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcacgccggttgatatcgtcctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgcatgctcgaagagcagcgtaaagttgctgagctgcgcaag
ttcctcaacgagatctataacgaaatcggcggtcgtcaggaatctctggaagacctcacc
gacaacgagattctggacctcgcgaagaacctgcgtaacggcgtaccgatggctaccccg
gttttcgacggtgccaaggaaagcgaaatcaaggcaatgctcaagctggcagatatgccg
gaaagcggccagatgcagctgttcgacggtcgtaccggcaacaagtttgaacgtgctgta
acggttggctacatgtacatgctgaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcgtacagcctggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatactgcgcggcgtac
actctgcaggaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaagaaatccgttcgctcggtatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
