Pseudonocardia sp. DSM 110487: K1T35_11435
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Entry
K1T35_11435 CDS
T10356
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psds Pseudonocardia sp. DSM 110487
Pathway
psds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1T35_11435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psds03019
]
K1T35_11435
03400 DNA repair and recombination proteins [BR:
psds03400
]
K1T35_11435
Enzymes [BR:
psds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K1T35_11435
Messenger RNA biogenesis [BR:
psds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K1T35_11435
DNA repair and recombination proteins [BR:
psds03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K1T35_11435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QYN37792
LinkDB
All DBs
Position
complement(2505141..2507687)
Genome browser
AA seq
848 aa
AA seq
DB search
MPRTDDEAQLLLDKWPDPPVGAVPHDPVVRRLADALAGLPADGSGRGDITALVRQVLLQT
DAATGQTGRLAVPDGAGLPRRQDWAAARCDVISTARGFSVAARPWHPPTPTAQRSAAAED
LRQILAARPDRAVAAPIPADPFWSTASGLRGYRSTGQRQAARAVVTAPPGGTVIVSLPTG
QGKTWVAFAPTLLDWSRRAVTVIVVPTVALALDVERRVEELLATRGHRTIGRRLAYVGEM
DESAKAAIRQAVAEGRQRILVTSPEAVATGLSTALQHAARAGRLGHLIIDEAHLVEQWGV
FRPHYQDLAGYRRTWLEQAPAGQRVVTVAMSATLTGHQVHTLAGMFPGEPTELVWASNLR
PETSYYLASFPCDDDRVDAVLTAAALLPRPMVLYASTRADVALWAHRLRGRNYRRVAEIT
GDDGLARRAEVLEGWRGYPGASGATRYDVVVATSAFGLGLDVPDVRTVLHACVPETIDRY
YQEVGRGGRDGRPCLSYLAEGPDDRAVAYGLNRQTLIGDERGWKRWRSMFRAGTWDGRVG
VVPLTATQADYSLDTQHNRAWNRRTLHLMAQAGLIELRSNNPSGASADRAGDDAQHGRDM
VVVKIVKAEANDEEAWGTAMGIRRDEKRGAQDAAIVEMLDVLDGGRCIGEVLAGYYTSEW
EDDRLGTGVTCRGCPDCRATRRPHGEPDLPPLYRVAPAPNPPLPAMTKAPDPLAGARGAS
SWLSLHWRDERERADLVPDLLERLARRGVAVFGGPGLDAATATALQAAARPAPIVVDRDH
DLVDGYRGTVVWLLEGDPPDPAVVQRLDSPDVTYLVHPATLGDHNRPGIALSEIHSAVLP
VTTALEIL
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagaactgacgacgaagcacaactcttgctcgacaaatggcccgacccgccggtg
ggcgccgtcccgcacgaccccgtcgtccgccgcctggccgacgccctcgccggcctgcct
gcggacggatcggggcgcggcgacatcacggcgctggtccggcaggtgctgctgcagacc
gacgcggccactgggcagaccgggcggctcgccgtcccggacggcgcggggctaccccgg
cgccaggactgggccgccgcgcggtgcgacgtgatctcaacggcccgcgggttctcggtc
gcggcgcgcccgtggcaccccccgacccccaccgctcaacggagtgcggcggccgaggac
ctgcggcagatcctcgccgcacggcccgaccgggccgttgccgccccgatcccggcggac
ccgttctggtccaccgcctccggcctgcgggggtaccggtcgacgggccagcgccaggct
gcccgcgcggtcgtcaccgctcccccgggtggcaccgtgatcgtcagcctgccgactggc
cagggcaagacgtgggtggccttcgccccgaccctgctggactggtcgcgcagggcggtc
acggtgatcgtcgtgccgaccgtggcgctggcgctggacgtggagcgccgggtggaggag
ttgctggcgacccgcgggcaccgcacgatcgggcgacgactggcctatgtcggtgagatg
gacgagtcggccaaggcggctatccgccaggccgtcgccgagggccgtcagcggatcctg
gtcacctcgccggaggcggtcgcgaccggtctgagcaccgctctgcagcacgccgcgcgc
gccggccggttgggtcacctgatcatcgacgaggctcacctcgtcgagcagtggggggtc
ttccgcccgcattaccaggacctcgccgggtaccggcgcacctggctggagcaggcccct
gcggggcagcgggtggtgacggtggcaatgagcgccacgttgaccggccaccaggtgcac
acgctggccggcatgttccccggcgagccgaccgaactcgtctgggcgtccaacctgcgc
cccgagaccagctactacctggcgtccttcccctgtgatgacgaccgcgtcgacgctgtg
ctcaccgcagcggccctgctgccccggccgatggtgctctacgcgtcgaccagggcagac
gttgcgctgtgggcgcaccggctgcgcggccggaactatcgccgggtcgcggagatcact
ggggacgacggccttgcccggcgcgccgaggtcctcgagggctggcggggctaccccggc
gccagcggcgcgacccgctacgacgtggtcgtggccacgtcggccttcggtctcgggttg
gacgtacccgacgtgcgtaccgtgctgcacgcctgcgtcccggagacgatcgaccggtac
taccaggaggtgggccggggcggccgggacggccggccgtgcctgtcctacctcgccgag
ggcccggacgaccgggccgtcgcctacggcctcaacaggcagaccctcatcggcgacgag
cgcggctggaagcgctggcgcagcatgttccgagccggcacatgggacggacgggtcggc
gtcgtaccgctaaccgccacgcaggcggactactcgctcgacacccagcacaacagagcg
tggaaccgccggaccctgcacctgatggcccaggccgggctgatcgaactgcgctcgaac
aatccctccggtgcgtccgccgaccgcgccggggacgacgcgcagcacggccgggacatg
gtcgtcgtgaagatcgtcaaggccgaggccaacgacgaggaggcgtggggcacggcgatg
ggcatccgccgcgacgagaagcgcggcgcgcaggacgccgccatcgttgagatgctcgac
gtgctcgacggggggcgctgcatcggcgaggttctcgccggctattacacctccgagtgg
gaggacgatcggttgggcaccggggtcacctgccgcggctgcccggactgccgggcgacc
cgcagaccgcacggcgagccggacctgccaccgctctaccgcgtggcccccgcgcccaac
cccccgctgccggccatgacgaaggcacccgatccgctcgccggggcacggggggcgtcg
tcgtggctgagcctgcactggcgcgacgagcgggagcgcgccgatctcgtccccgacttg
ctggagcggctggcccggcgcggcgtcgcagtgttcggcggccccggcctggacgccgcg
accgcgaccgcgctgcaggcggcggcgcgaccggcaccgatcgtcgtcgaccgcgaccac
gacctcgtcgacggctaccggggtaccgtcgtctggctgctcgaaggcgacccgcccgac
cccgcggttgtgcaacgcctcgattcccccgacgtcacctacttggtgcatccggctaca
ctcggcgatcacaaccggcccggtattgccctgagcgagatccattccgctgtcctccca
gtgacgactgccctggagatcctctga
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