Pseudonocardia sp. AL041005-10: WY02_25295
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Entry
WY02_25295 CDS
T04051
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psea
Pseudonocardia sp. AL041005-10
Pathway
psea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WY02_25295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psea03019
]
WY02_25295
03400 DNA repair and recombination proteins [BR:
psea03400
]
WY02_25295
Enzymes [BR:
psea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WY02_25295
Messenger RNA biogenesis [BR:
psea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WY02_25295
DNA repair and recombination proteins [BR:
psea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
WY02_25295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_30
AAA_22
HVO_A0261_N
SWI2_SNF2
zf-AtTam37
Motif
Other DBs
NCBI-ProteinID:
ALE81150
LinkDB
All DBs
Position
complement(5364520..5366631)
Genome browser
AA seq
703 aa
AA seq
DB search
MGAVTTASSTDLRERAETVLQQLAGPQARLREDQWRAIEALVAQHRRALVVQRTGWGKSA
VYFVATALLRAQGAGPTVIVSPLLALMRNQIDAAIRSGIVAVTVNSANADEWDAVYADIA
NGDVDVLLVSPERLNNPDFRDRVLPELAASAGMLVVDEAHCVSDWGHDFRPDYRRLRTLI
AELPSGIPVLATTATANDRVVTDVSEQLGMGRDQQDTLVLRGSLDRESLRLAVVRLPSPA
RRLAWLAAKLDEMPGAGIVYTLTVQAADDVAEFLRERGVAVRSYSGRTDPEDRLAAESDL
MENRVKALVATSALGMGFDKPDLGFVVHLGAPASPVAYYQQIGRAGRALDRAEVVLLPGR
EDRDIWAYFASLAFPPEPLVRQTLAVLSDRPQSTATIETRVDLSRTRLEMLLKVLDADGA
AKRVKGGWVATGQEWVYDTERHERVNSARRSEQQAMLDYIATTECRLVFLRRQLDDPDPT
PCGRCDTCTGTVWSDEVSADGEQAAAERLTRPGIEVAPRKMWPSGMKDIGVPLSGRIGAG
EQAASGRAIGRLSDIGWGTRLRELVTGGDDPVPADVLDALVRVLAGWGWEQRPVGVVGMG
SRTRPHQLDHLARRIAEIGRLPLLGTLSPAGERPAATENSAQRLAAVWEGLDSATVPDLS
GVDGPVLLVDDVLDSGWTMTVAARALRRAGAPEVLPLVLAVAG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgggtgccgtgaccaccgcatcgagcaccgacctgcgcgagcgcgccgagaccgtcctg
cagcagctggccggcccgcaggcccggctgcgcgaggaccagtggagggcgatcgaggca
ctcgtcgcccagcaccgccgcgcgctggtcgtgcagcgcaccggctggggcaagtccgcg
gtctacttcgtggcgaccgcgctgctccgcgcgcagggcgccgggccgacggtgatcgtg
tcgccgctgctggcgctgatgcgcaaccagatcgacgccgcgatccgctccgggatcgtg
gcggtcacggtgaactcggcgaacgccgacgagtgggacgcggtctacgccgacatcgcg
aacggcgacgtcgacgtgctgctcgtgtcccccgagcggctcaacaaccccgacttccgg
gaccgggtgctgccggagctggcggcgagcgcggggatgctggtggtcgacgaggcgcac
tgcgtctccgactggggccacgacttccgcccggactaccggcggctgcgcacgctgatc
gccgagctgccgtcggggatcccggtgctggccacgacggcgacggcgaacgaccgggtc
gtcaccgacgtgtccgaacagctcggcatggggcgcgaccagcaggacacgctggtgcta
cgcgggtcgctggaccgcgagtcgctgcgcctggcggtggtccggctcccgagcccggcc
cggcggctggcctggctcgcggccaagctggacgagatgcccggcgccgggatcgtgtac
acgctcaccgtccaggcggccgacgacgtcgccgagttcctgcgcgagcgcggcgtcgcc
gtgcgctcctactccgggcgcaccgaccccgaggaccgcctcgccgccgagtccgacctg
atggagaaccgggtgaaggccctggtcgcgacctccgcgctgggcatgggcttcgacaag
cccgacctcgggttcgtcgtccacctcggcgcgcccgcctcgccggtcgcctactaccag
cagatcggccgtgccgggcgtgcgctggaccgggccgaggtggtgctgctgcccggccgc
gaggaccgcgacatctgggcctacttcgcgtcgctggcgttcccgcccgagccgctggtc
cgccagaccctcgccgtgctgtcggaccggccgcagtccaccgccacgatcgagacccgg
gtcgacctgtcccgcacccggctggagatgctgctcaaggtcctcgacgccgacggcgcc
gcgaagcgggtcaagggcggctgggtcgcgaccggccaggagtgggtctacgacaccgag
cggcacgagcgcgtgaactccgcccgccggtccgagcagcaggcgatgctcgactacatc
gcgaccaccgagtgccggctggtgttcctgcgccgccagctcgacgacccggacccgacg
ccgtgcgggcgctgcgacacgtgcaccggcaccgtctggtccgacgaggtgtccgccgac
ggcgagcaggccgccgccgagcgcctgacccggcccgggatcgaggtcgcgccgcggaag
atgtggccgtcggggatgaaggacatcggggtcccgctgtccgggaggatcggcgcgggc
gagcaggccgcgtccggccgggcgatcgggcggctgtccgacatcgggtggggcacccgg
ctgcgcgagctcgtgaccggcggcgacgacccggtgccggccgacgtgctcgacgcgctg
gtccgggtgctcgccgggtggggctgggaacagcgtccggtgggcgtggtcgggatgggc
tcccgcacgcgcccgcaccagctcgaccacctcgcccggcggatcgccgagatcggcagg
ctgccgctgctcggcaccctgtcccccgccggcgagcgccccgcggcgaccgagaactcc
gcccagcgcctggccgcggtgtgggaggggctcgacagcgcgaccgtgccggacctgtcc
ggggtggacgggccggtactgctggtcgacgacgtcctcgactcgggctggacgatgacg
gtcgccgcgcgggcgctgcgccgggccggggccccggaggtgctgccgctcgtactggcc
gtcgccgggtga
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