Pseudoalteromonas sp. NC201: PNC201_01540
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Entry
PNC201_01540 CDS
T05464
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psen
Pseudoalteromonas sp. NC201
Pathway
psen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PNC201_01540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psen03021
]
PNC201_01540 (rpoB)
03400 DNA repair and recombination proteins [BR:
psen03400
]
PNC201_01540 (rpoB)
Enzymes [BR:
psen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PNC201_01540 (rpoB)
Transcription machinery [BR:
psen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PNC201_01540 (rpoB)
DNA repair and recombination proteins [BR:
psen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PNC201_01540 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AUJ68652
LinkDB
All DBs
Position
357596..361621
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLQMQLESFDKFIAPDADGDTGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVLMDKDAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKSHSSGKVLYNARVIPYRG
SWLDFEFDVKDNLYVRIDRRRKLPASIILRALEFTSDEILALFFETTSFEVKDGKVLMEL
VPSRLRGETAAFDIKDANGDVLVEKGRRITARHIKSIEKQGIDTLEVPHEYIIGRVVAKN
YIDESTGEVIAEANSELSLELMAELVKAGHSKIDTLYINEVDSGAYMSETLRVDSTNNRL
EALVEIYRMMRPGEPPTKEAAEALFDNLFFSEERYDLSTVGRMKFNSRVGYDSDEGDGTL
SKEDIVSVMKVLIDIRNGKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGIVT
DDVDYLSAIEEGQFVIAQANTTLTDDNQFAEELIPCRFKGESTFMPSDSIQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTLAKDSGVTIVAKR
GGIVKYADASRIVVNVNEDERIQGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVVRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSENVVKEDRLTTIHIQELQCIA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEGGILTHARNLLIKSGMSEEQLAGFNTEKLLTQSLADEEHQAELEQLAAQYDE
LKADYDKRFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERLEEMMKEQREIHE
LREFIKKAYEIGDCRQKVDIANFSDDEIRRLADNLKGGLPIATPAFDGAREAEIKDMLEL
GGYPRSGQVTLYDGRTGDAFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEI
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacag
gttttggacatacctttcctactgcaaatgcagttggaatcgttcgataagttcattgcg
cctgatgccgatggcgatactggattggaagctgccttccgttctgtattccctatcaag
agctactcgggcaactctgaacttcaatacgtcagttatcgtattggcgagccagtattt
gacgttaaagaatgtcaaattcgcggtgtgacatattctgctccacttcgcgttaaacta
cgtcttgtgctaatggacaaagatgcacctggcacagtcaaagacataaaagagcaagaa
gtttacatgggcgaaatcccgctcatgacagacaccggtacttttgtaatcaatggtact
gagcgtgttatcgtttctcagctacaccgttcacctggtgtattctttgataacgaccgt
ggtaaatcacactcatctggtaaagtgttatataacgcacgtgtgatcccttaccgtggc
tcatggcttgactttgaattcgacgttaaagataacctttacgttcgtattgaccgtcgc
cgtaaactaccagcatctatcatcttacgtgcgctagagttcacttcagacgaaatcttg
gcactattttttgaaacgacaagtttcgaagtaaaagatggcaaagtgttgatggaactt
gtgccttcacgcctacgtggtgaaaccgctgcatttgatattaaagatgcaaacggtgac
gtattggttgaaaaaggccgtcgtattactgcacgccacattaagagcatcgaaaagcaa
ggcatcgacactcttgaagtaccgcatgagtacatcatcggtcgtgttgttgctaaaaac
tatatcgacgaatcaacaggcgaagtgattgcagaagcgaactctgaactatcactagag
cttatggctgaattggtgaaggcaggtcactcaaagatcgatacgctttacatcaacgaa
gtagacagcggtgcgtacatgtcagagacattacgtgttgattctactaacaatcgccta
gaagcattggtagaaatctatcgcatgatgcgccctggtgagccaccaacaaaagaagct
gcagaagcgttatttgataacctattcttctctgaagagcgctacgacctttcaaccgtt
ggtcgtatgaagttcaatagccgtgttggttatgattcagacgaaggtgacggtacgcta
tctaaagaagatatcgtgagcgtgatgaaggtattgatcgacatccgtaacggtaaaggc
gatgttgatgacatcgaccacttaggtaaccgtcgtatccgttctgtaggtgaaatggct
gaaaaccaattccgtgtaggtcttgtacgtgttgagcgtgcggtacgtgagcgtctaagt
cttggtgacctagataacgttatgccacaggatttgatcaacgctaagccaatctctgca
gcagtaaaagaattctttggttcttcacagctttcacagtttatggaccagaacaacccg
ctttcagaagtaacgcacaagcgtcgtatttctgcattaggtccgggtggtctaactcgt
gagcgtgctggcttcgaagtacgtgacgtacacgtaacgcactacggtcgtgtttgtcct
atcgaaacgcctgaaggtccaaacatcggtctaatcaactcgctatctacttacgcgcgt
acaaacgactatggtttcttagagactccataccgcaaagtagtagacggtatcgttact
gacgatgttgattacctatcagcaattgaagaaggtcagttcgttatcgcacaggcgaat
acaacgctaaccgatgacaaccaatttgctgaagaattgattccatgtcgttttaaaggt
gaatcaacctttatgccaagcgacagcatccagtatatggacgtatctccacagcaggta
atctctgtggctgcagcgcttatcccattcctagaacacgatgacgcgaaccgcgcattg
atgggatcgaacatgcaacgtcaagctgtacctacactacgtgctgataagccgctagtt
ggtactggtattgagcgtacactagcgaaagactctggtgtaacaatcgttgctaagcgt
ggcggtatcgttaagtatgctgatgcaagccgtattgttgttaacgttaatgaagatgag
cgcatccaaggtgaagcgggcatcgacatctataacttaactaagtacacacgttcaaac
caaaacacttgtatcaaccagaaaccaacttgtatggttggtgagccggtggtacgtggt
gacgtgcttgctgatggtccttcaacagacctaggtgatttagcacttggtcagaaccta
cgtgtagcgttcatgccttggaatggttacaacttcgaggattcaatcctactttcagag
aatgttgtaaaagaagatcgtctaacgactatccacattcaagagcttcagtgtattgct
cgtgatactaagcttggtccagaagaaatcactgcggatattccaaacgtaggtgaatct
gcactaggtaagcttgacgaatcaggcgttgtatatatcggtgctgaagtgaaaggcggc
gacatccttgtaggtaaagtaacgcctaaaggtgaaacgcagctaacacctgaagaaaag
ctactacgcgctatcttcggtgaaaaagcgtctgacgttaaagacagctcactacgtgta
ccaaactctgtatctggtacggttatcgacgtacaagtgtttacgcgtgacggtgttgaa
aaagacaaacgtgcactagaagttgaagatatgcagcttcgcgaagcgaagaaagacttc
aacgaagagttcagaatccttgaaggcggtatcctgactcacgctcgtaacctactgatt
aaatcaggtatgagtgaagagcagcttgctggctttaacactgagaagctactaacgcaa
agtcttgctgatgaagagcaccaagcagagcttgagcaactagctgcacagtatgacgag
cttaaagctgactacgataagcgtttcgagaacaagcgtcgtaagatcactcaaggtgat
gatctagcgcctggcgtacttaagattgttaaagtatacctagctgttaaacgtcgtatc
caacctggtgataagatggcgggtcgtcacggtaacaagggtgtaatctcaactatcgtt
cctgttgaagacatgccttacgatgataaaggtcgtactgtagatatcgtacttaacccg
ctgggtgtaccatctcgtatgaacatcggtcagatcctagaaacccacatgggtctagct
gctcgtggtatcggcgaacgtcttgaagaaatgatgaaagagcaacgcgaaattcacgag
ctacgcgaattcatcaagaaagcttacgaaatcggtgactgccgtcagaaagtagatatt
gctaacttctctgatgatgaaatccgtcgcttggcagataaccttaaaggtggtcttcca
atcgcaacaccagcatttgatggtgcacgtgaagctgaaatcaaagacatgctagagctt
ggtggttatccaagaagtggtcaggtaacgttatatgatggtcgtactggtgatgcattt
gagcgtcaagtaacagtaggctacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgcgcgttcaacaggttcttacagcctagttactcagcagccgctgggtggt
aaggcacagttcggtggtcagcgtttcggtgagatggaggtatgggcactagaagcatac
ggtgctgcctacacgctacaagaaatgttgacagtgaagtcggatgacgttaacggtcgt
actaagatgtataagaacatcgtagacggtaaccacaagatggaaccgggtatgcctgag
tcgttcaacgtactgttgaaagaaatccgctcgctaggtatcaacatcgagttggaagaa
atttaa
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