KEGG   Pseudoalteromonas sp. NC201: PNC201_03200
Entry
PNC201_03200      CDS       T05464                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
psen  Pseudoalteromonas sp. NC201
Pathway
psen02024  Quorum sensing
psen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PNC201_03200 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PNC201_03200 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psen03019]
    PNC201_03200 (hfq)
   03036 Chromosome and associated proteins [BR:psen03036]
    PNC201_03200 (hfq)
Messenger RNA biogenesis [BR:psen03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PNC201_03200 (hfq)
Chromosome and associated proteins [BR:psen03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PNC201_03200 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AUJ68976
LinkDB
Position
743441..743704
AA seq 87 aa
MAKGQSLQDPFLNVLRRERIPVSIFLVNGIKLQGKIQSFDQFVILLENTVNQMVYKHAIS
TVVPARAVNFQNATGSEAGDQGEEGNY
NT seq 264 nt   +upstreamnt  +downstreamnt
atggcaaaaggccaatctttacaagacccatttttgaatgtcttgcgtcgtgagcgcatt
cctgtctcaatttttttagtgaatggcattaaattacagggcaagatccagtcatttgac
caatttgtgattttgcttgaaaacacagtaaaccaaatggtttacaaacacgccatctcc
actgtggttccagctcgtgcggttaacttccaaaatgcaaccggaagtgaagcgggcgac
caaggtgaagaaggtaattattaa

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