Pseudomonas sessilinigenes: C4K39_4077
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Entry
C4K39_4077 CDS
T07575
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psep
Pseudomonas sessilinigenes
Pathway
psep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C4K39_4077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psep03021
]
C4K39_4077
03400 DNA repair and recombination proteins [BR:
psep03400
]
C4K39_4077
Enzymes [BR:
psep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C4K39_4077
Transcription machinery [BR:
psep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C4K39_4077
DNA repair and recombination proteins [BR:
psep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C4K39_4077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AZC25735
LinkDB
All DBs
Position
4350273..4354346
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVKGES
LSLELVPQRLRGEVAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELDVPLDYVLGR
TTAKAIVHPATGEILAECNTELNTELLAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGLVTDEIVFLSAIEEADHVIAQASATMNDKGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKVEGGAGLKKGQEITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLANNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgttggagtatgtcggttatcgcctgggc
gaaccggcgtttgatgtcaaagaatgcgtgttgcgtggcgtgacttacgccgtacctttg
cgggtaaaagttcgtctgatcattttcgacaaagagtcgtcgaataaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaattcccctgatgactgagaacggtaccttc
gtaatcaatggtaccgaacgtgtaatcgtttcccagttgcaccgttcccctggcgtattc
ttcgaccacgaccgtggcaagacgcacagctccggtaagctcctgtactccgcgcgcatc
attccttaccgcggttcgtggttggacttcgagttcgacccgaaagactgtgtattcgtc
cgtatcgaccgtcgtcgcaaacttccagcgtcggttctgctgcgcgccctgggttacacc
accgaggaagtactggacgcgttctataccaccaacgtattccacgtgaagggcgagagc
ctgagcctggagctggtgcctcagcgcctgcgcggtgaagttgccgttctggatatccag
gatgacaagggcaaggttattgtcgagcaaggacgtcgtattactgctcgtcatatcaat
cagctggaaaaagccggtatcaaagagctggatgtgcctctggactatgttctgggtcgc
actaccgccaaggctatcgtgcatccagcgactggtgaaatcctggcagagtgcaacacc
gagctgaacaccgagctgctggcaaaaatcgccaaggcccaggttgttcgcattgaaact
ctgtacaccaacgacattgactgtggtccattcgtttccgacacgctgaagatcgactcc
actagcaaccaactggaagctctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgctgccgagaccctgttcaacaacttgttcttcagcccagagcgctat
gacttgtccgccgttggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaagaagacatcgttgctgttctgaagaccctggtcgacatc
cgtaacggtaagggcatcgtcgatgacatcgaccacctgggtaaccgtcgcgtacgttgc
gtaggcgagatggccgagaaccagttccgtgtgggcctggtgcgtgtagagcgcgcggtc
aaggaacgtctgtcgatggctgaaagcgaaggcttgatgccgcaggacctgatcaacgcc
aagcccgtggctgcggcagtgaaggagttctttggctccagccagctgtcccagttcatg
gaccagaacaacccgctgtccgagattacccacaagcgccgtgtgtctgcactgggccca
ggtggtctgactcgtgagcgcgcaggcttcgaagttcgtgacgtacacccgactcactac
ggccgtgtatgcccgattgaaacgcctgaaggtccgaacattggtctgatcaactccttg
gctgcctacgctcgcaccaaccagtacggtttcctggagagcccgtatcgtgtggtgaaa
gaaggcctggtaaccgatgagatcgtgttcctgtccgccatcgaagaagctgaccacgtg
atcgcccaggcttcggcgaccatgaacgacaagggtcagctgatcgacgagctggtagct
gtacgtcatctgaacgaattcaccgtcaaggcgccggaagacgtcaccttgatggacgtt
tcgccgaagcaggtagtgtcggttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaggctgtaccaactctgcgtgcc
gataagccgctggtgggtaccggcatggagcgcaacgttgctcgtgactccggcgtgtgc
gtcgtggctcgccgtggtggtgtgatcgactccgtcgatgccagccgtatcgttgttcgg
gttgctgatgatgaagttgaaaccggcgaagctggtgtcgacatctacaacctgaccaaa
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgac
aaggtccagcgtggcgacatcatggccgacggcccgtccaccgacatgggtgaactggca
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctctccgagcgtgtggttcaggaagaccgcttcaccaccatccacatccaggaa
ctgacctgtgtggcgcgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggtgctggcgacatcctggtcggcaaggtcacgccaaaaggcgaaacccagctg
actccggaagaaaagctgctgcgcgcaatcttcggtgagaaggccagcgacgttaaggac
acctccctgcgcgtgccaaccggcaccaaaggtactgtcatcgacgtacaggtattcacc
cgtgacggcgtagagcgtgactcgcgtgccctgtcgatcgagaagagccagttggacgag
atccgcaaggatctgaacgaagagttccgtatcgttgaaggtgcaaccttcgaacgtctg
cgttccgctctggtcggtcataaggtggaaggcggtgccggcctgaagaaaggtcaggaa
atcaccgatgaagtgctcgatggtcttgagcatgggcagtggttcaagctgcgcatggct
gaagatgctctgaacgagcagctcgagaaggcccaggcctatatcgttgatcgccgtcgc
ctgctggacgacaagtttgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtctacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgatgtggtcctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaactcacctgggcctggcggccaaaggt
ctgggcgagaagatcaaccgtatggtcgaagagcagcgcaaggttgctgaactgcgtacc
ttcctggacgagatctacaaccagatcggcggtcgtaacgaagatctggacagcttctcc
gaccaggagatcctggacctggcgaacaacctgcgcggcggtgtgccaatggccactccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctcaaactggcggacctgcca
gaaagcggccagatgcagctgaccgacggtcgtaccggcaacaagttcgagcgtccagtt
accgttggctacatgtacatgctgaaactgaaccacttggtagacgacaagatgcacgcc
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
