Pseudomonas sp. TCU-HL1: THL1_4329
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Entry
THL1_4329 CDS
T05373
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
THL1_4329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pset03400
]
THL1_4329
Enzymes [BR:
pset01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
THL1_4329
DNA repair and recombination proteins [BR:
pset03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
THL1_4329
Prokaryotic type
THL1_4329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AOE86877
UniProt:
A0A1B3EBF2
LinkDB
All DBs
Position
complement(4651280..4651972)
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AA seq
230 aa
AA seq
DB search
MTDDDRIKLDASWKEALRDEFEKPYMKALGDFLRQEKAAGKVIFPPGPLIFNALNTTPLD
QVKVVVIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELKRDLNIEIPSHGYLQSWA
EQGVLLLNTSLTVEQSRAGSHAGAGWQPFTDKVIEVVSQQRSGLVFLLWGSHAQSKERLI
DPTKHLILKSAHPSPLSAYRGFLGNGHFSRCNKFLAQHGLQPIDWRLPEL
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgacgaccggatcaagctcgacgcgagctggaaagaagccctgcgggacgag
ttcgaaaagccctacatgaaggccctcggcgacttcctgcgccaggagaaggcggccggc
aaggtgatcttcccgccgggcccgctgatcttcaacgccctgaacaccacgccgctggac
caggtgaaagtggtcgtcatcggccaggacccttaccacgggccgggccaggcgcacggg
ctgtgcttctcggtgcagccaggtgtgccgacgccgccgtcgctgcagaacatctacaag
gagctcaagcgcgacctgaacatcgagattccgtcccacggctacctgcaatcctgggcg
gagcagggtgtgttgctgctcaacacgtcccttaccgtcgagcagtcccgcgcgggctcc
catgccggtgccggatggcagccgttcaccgacaaggtgatcgaagtggtcagccagcag
cgttcgggcctggtgttcctgctctggggttctcacgcacagagcaaggagcgcctgatc
gaccccaccaagcatctgatcctgaagtcagcacatccgtcgccgctctcggcgtatcgc
ggattcctcggcaacggtcacttcagccgctgcaacaagttcctcgcccagcacgggctg
cagccgatcgactggcgcctgcctgagctttga
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