Pseudomonas sp. TCU-HL1: THL1_5210
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Entry
THL1_5210 CDS
T05373
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset02024
Quorum sensing
pset03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THL1_5210
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
THL1_5210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pset03019
]
THL1_5210
03036 Chromosome and associated proteins [BR:
pset03036
]
THL1_5210
Messenger RNA biogenesis [BR:
pset03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
THL1_5210
Chromosome and associated proteins [BR:
pset03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
THL1_5210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AOE87757
LinkDB
All DBs
Position
complement(5637422..5637676)
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AA seq
84 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPSASEQEQPEPGNT
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacctcaataccctgcgtaaggaacgcgta
ccggtttccatctatctggtgaacggcatcaagctgcagggccagatcgaatccttcgac
cagttcgtgattctgctgaagaacactgtcagccagatggtctacaagcacgctatctcc
actgtggtaccaagtcgtccggtacgcctgcccagcgcttccgagcaggagcagcctgag
ccgggtaacacctga
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