Pseudomonas sp. TCU-HL1: THL1_5466
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Entry
THL1_5466 CDS
T05373
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THL1_5466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pset03019
]
THL1_5466
03400 DNA repair and recombination proteins [BR:
pset03400
]
THL1_5466
Enzymes [BR:
pset01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THL1_5466
Messenger RNA biogenesis [BR:
pset03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THL1_5466
DNA repair and recombination proteins [BR:
pset03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THL1_5466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
EccE
Cas3-like_C_2
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AOE88013
LinkDB
All DBs
Position
complement(5927565..5929502)
Genome browser
AA seq
645 aa
AA seq
DB search
MPATSLAKVFGYDSFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVV
SPLLALMQDQLAFLHRHGIAAASIDSAQSREAVAEVMARARSGELKILMISVERLKNERF
RSFIQQVPISLLVVDEAHCISEWGHNFRPDYLKLPEYQHQFGIPQVLLLTATATPTVIAD
MQRKFAIADADVITTGFYRPNLNLLVEPVAGARKLERLADWLGARTGQPAIVYVTLQKTA
EEVARHLTERGVAASAYHAGMPTEEREALQRRFMAGQVNVMVATIAFGMGIDKSDIRQVV
HYDLPKSVENYSQEIGRAGRDGKPSDCLVLANRDSLNVLENFVYGDTPELAGIRQVLEEL
KASGASGDRWELMLGALSDQSNIRQLPLKTLLVQLELREIIAPLFAYFAEYRFKYLQEPD
ALVRQFEGERRQFVEALVQTSTRARTWCTVDFDRLYRDHSAERSRVVKALDYFQERGWIE
LESKQMTEVYAVLKPDFEPAALAAELHGYFRQQERSEIARIQAMLALFASEHCLSARLAH
YFGDLAVPEHCGHCSVCQGRIARLPAPPALPPLEGQDFQALCGAFMRRYEELKGERPGVE
CLTRLLCGITAPLFTRLKARSLPGFAALEAYPYAEVRDWVSRQMG
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaaccagcctcgccaaggtgttcggttacgacagttttcgccccggccaggaa
gccgccatttctgccgtgctggccggccgctcggctgccgccatcttccccacaggctcc
ggcaagtccctctgctaccagttgccggcgctgcacctgccgcacctgaccctggtggta
tcgccgctgctggcgctgatgcaggaccagttggccttcctccatcgccatggcatcgcc
gccgccagcatcgattcggcgcaaagccgcgaagcggtggccgaggtcatggcgcgggcc
cgatccggggagctgaagatcctgatgatctccgtggagcgcctgaagaacgaacgcttt
cgcagcttcatccagcaggtgccgatttccctgctggtggtggacgaggcccactgcatt
tccgagtggggccacaacttccgccccgactacctcaagctgcccgagtaccagcaccag
ttcggcattccccaggtgttgttgctgaccgccacggcgacgccgacggtgatcgccgac
atgcagcgcaagttcgccatcgccgatgccgatgtcatcaccaccggcttctaccgcccc
aacctcaacctgctggtggaaccggtggctggagcgcgcaagctggagcggctggcggat
tggctgggcgcccgcaccgggcagccggccatcgtctacgtgaccctgcagaaaaccgcc
gaagaggttgcccggcacctcactgaaaggggcgttgccgccagtgcctaccatgccggc
atgcccactgaagaacgtgaggccctgcagcgccggttcatggccgggcaggtcaacgtg
atggtcgccaccattgccttcggcatgggcatcgacaaaagcgacatccgccaggtggtg
cactacgacctgcccaaatcggtggagaactacagccaggaaatcggtcgcgccggacgc
gacggcaagccgtcggactgcctggtgctggccaatcgcgacagcctcaacgtgctggaa
aacttcgtctacggcgataccccggagctggccggtatccggcaggtgctggaggaactg
aaggcctcgggggcgtcgggcgaccgttgggagctgatgctcggtgcgctctcggaccag
agcaatattcgccagttgccgttgaaaaccctgctggtgcaactggagctgcgcgagatc
atcgcgccactgttcgcctacttcgccgagtaccgtttcaagtacctgcaggagcctgat
gccctggtacggcagttcgagggcgagcgtcgccagttcgtcgaagccctggtgcagacg
tccacccgcgcgcgcacctggtgcacggtggatttcgaccggctctatcgtgatcacagc
gccgagcgcagccgcgtggtgaaggccctggactacttccaggagcgcggctggatcgag
ctggaaagcaagcagatgaccgaggtctacgcggtgctcaagcccgatttcgagcccgct
gcgctggccgccgagctgcacggctacttccgccagcaggagcgcagcgaaatcgctcgt
atccaggcgatgctggcgctgttcgccagtgaacactgcctcagcgcacggctggcccac
tactttggcgacctggcggtacccgagcattgcggccattgctcggtttgccaggggcgg
atcgccaggctgcctgcaccgccggcgctgccaccgctggaggggcaggacttccaggcg
ttgtgcggggccttcatgcgtcgatacgaagagttgaagggcgagcgacccggcgtcgaa
tgcctcactcgcctgctgtgtggcatcacggcgccgctcttcacccggctcaaggctcgc
agcctgcccggctttgccgcccttgaagcctatccctacgccgaggtgcgcgactgggtc
agccgccagatggggtga
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