KEGG   Pseudoclavibacter triregionum: USB125703_01303
Entry
USB125703_01303   CDS       T07344                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
psev  Pseudoclavibacter triregionum
Pathway
psev03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:psev00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    USB125703_01303 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psev03400]
    USB125703_01303 (mfd)
Enzymes [BR:psev01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     USB125703_01303 (mfd)
DNA repair and recombination proteins [BR:psev03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      USB125703_01303 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter Helicase_C CarD_TRCF_RID TRCF ResIII AAA_22 DUF3638 RecG_dom3_C MFD_D3
Other DBs
NCBI-ProteinID: CAG7845047
LinkDB
Position
1:1461219..1464860
AA seq 1213 aa
MSIQAVVPALRDAEGFAAALESFGRSGDFTLVDGMRGPLLAGLLAERAPEARCLAAITAT
SREAEQLRDDLAAYLPQAELVELPAWETLPHERLSPSAETTGRRLVAMRALAEWKAGGRE
RPFVLLASVRAALQPLLPGLDEPRTIDLAAGSRGNDLEAISRRLVELAYSRVDMVTRRGE
FAVRGGILDVFPPDADHALRIDFFGDEIEEIRPFAVSDQRSLDAEVDAVRLTPSRELLLD
EGVRQRAREMRPEFPSLEQMLAKIEEGIPVEGMESLAPALVPGLVDLAHYLPEEAAVAVV
SPERVVTRALHLAETNKEFLAAAWSAATAGAQAPIDLAAGDFLTLPQLRESAGERAWWTL
SPLHQDDEDVAIDVPGDAVPSFSGNAEGALAHVASRLAAGWSVVIASRGHGLVERAAQLL
AEREQAGRPVDELPDALEPGVAYLVQSSVANGLELPAAKLAVLTEGDFYGRAAGVDARQP
RKLARRRGGTVVDPLQLKPGDLVVHDTHGIGRFRELAQRQVITNARTRQKTTREYLVIEY
APSKRGQPGDKLFVPTDQLDQLTRYVGGEEPALSKMGGQDWAAAKGRARKAVRDIAVELV
KLYSARMASKGHAFGPDTPWQRELEEAFPFAETADQLQTIDEVKRDMERPIPMDRLLSGD
VGFGKTEVAVRAAFKAVQDGKQVVMLVPTTLLVRQHLETFQARMAGFPVTIRGLSRFQSK
KESEETKRGLADGSVDIVIGTHRILTEGIAFKDIGLLIIDEEQRFGVEHKDALKKLKTNV
DILAMSATPIPRTLEMAVTGIREMSTLATPPEDRQPILTFVGPKSDRQIAAAIRRELLRE
GQVFYVHNRVSSINRIAAELAELVPEARIAVAHGKLSESSLEQVIVDFWERKFDVLVTTT
IVETGLDIPNANTLIIDDAERYGLSQLHQLRGRVGRGRERGYAYFLYDGARPLTETATDR
LETIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMIGEAVSTFRGE
VAEGQTELRLELPVDARIPEEYIGSERLRLEAYQKLSSASSPTAKAGAIDLVVEELRDRY
GEPPAEVGTLLEVSRLRRLAVRARLSELIVFGKTLRMSPVELPDSKQMRLRRMYPGAKLV
EATSSLAFPNLEARDGGTPSDEEIIAWIRGIFRAIFELEDEEAEEGPASPDAASTASAAA
DDAAKAAESGREA
NT seq 3642 nt   +upstreamnt  +downstreamnt
gtgagcatccaggccgtcgtcccagcactccgcgacgccgaagggttcgcggccgcgctc
gaatccttcggccgatccggcgacttcacgctcgtcgacggcatgcgcgggccgctcctc
gccgggctcctcgccgagcgcgcgcccgaggcccgctgcctcgccgcgatcacggcgacg
agccgcgaggccgagcagctccgcgacgacctcgctgcctacctgccccaggccgagctc
gtcgagctgcccgcctgggagacgctcccgcacgagcgcctcagcccctccgccgagacg
accggccgccgcctcgtcgcgatgcgcgccctcgccgagtggaaggccggcggccgcgag
cgccccttcgtgctgctcgcgagcgtccgcgccgccctccagccgctcctgccgggcctc
gacgagccccgcacgatcgacctcgccgccggctcccgcggcaacgacctcgaggccatc
tcgcgccgcctcgtcgagctcgcgtactcgcgcgtcgacatggtgacccgccgcggcgag
ttcgccgtccgcggcggcatcctcgacgtcttcccgccggacgccgaccacgcgctccgc
atcgacttcttcggcgacgagatcgaggagatccgtcccttcgccgtctccgaccagcgc
tcgctcgacgccgaggtggacgccgtccgcctcaccccgagccgcgagctgctcctcgac
gagggcgtgcggcagcgggcccgcgagatgcggcccgagttcccgagcctcgagcagatg
ctcgcgaagatcgaggagggcatcccggtcgagggtatggagtcgctcgcgccggcgctc
gtgcccggcctcgtcgacctcgcccactacctccccgaggaggccgccgtcgcggtcgtc
tcgcccgagcgcgtcgtcacccgcgccctccacctcgcggagacgaacaaggagttcctc
gccgccgcctggtcggccgcgaccgccggcgcgcaggcgcccatcgacctcgccgcgggc
gacttcctcaccctcccgcagctgcgcgagtcggcaggggagcgcgcctggtggacgctc
tcgcccctccaccaggacgacgaggacgtcgcgatcgacgtgccgggcgacgccgtcccg
agcttctccggcaacgccgagggcgccctcgcgcacgtcgcgagccgcctcgccgccgga
tggtcggtcgtcatcgcgagccggggccatggcctcgtcgagcgcgccgcccagctgctc
gccgagcgcgagcaggccggccgccccgtcgacgagctgccggacgccctcgagccgggc
gtcgcctacctcgtgcagtcctccgtcgcgaacggcctcgagctgcccgccgcgaagctc
gccgtgctcaccgagggcgacttctacggccgcgccgccggcgtcgacgcgcgccagccc
cgcaagctcgcccggcgacgcggcggcaccgtcgtcgacccgctccagctcaagccgggc
gacctcgtcgtgcacgacacgcacggcatcgggcgcttccgcgagctcgcgcagcgccag
gtcatcacgaacgcgcgcacccgccagaagacgacccgcgagtacctcgtcatcgagtac
gcgccctcgaagcgcgggcagccgggcgacaagctcttcgtgccgaccgaccagctcgac
cagctcacccgctacgtcggcggcgaggagcccgcgctctcgaagatgggcggccaggac
tgggccgccgcgaagggccgcgcgcggaaggccgtccgcgacatcgccgtcgagctcgtg
aagctctactcggcgcgcatggcgtcgaagggccacgccttcggccccgacacgccgtgg
cagcgcgagctcgaggaggccttccccttcgccgagaccgccgaccagctccagacgatc
gacgaggtgaagcgcgatatggagcggccgatcccgatggatcgcctcctctccggcgac
gtcggcttcggcaagaccgaggtcgcggtgcgcgccgcgttcaaggccgtgcaggacggc
aagcaggtcgtcatgctcgtgccgacgacgctcctcgtgcgccagcacctcgagaccttc
caggcgcgcatggcgggcttccccgtgacgatccggggcctgtcccgcttccagtcgaag
aaggagtcggaggagacgaagcgcggcctcgcggacggctcggtcgacatcgtcatcggc
acgcaccgcatcctcaccgagggcatcgcgttcaaggacatcggcctgctcatcatcgac
gaggagcagcgattcggcgtcgagcacaaggacgcgctgaagaagctcaagacgaacgtc
gacatcctcgcgatgagcgcgacgccgatcccgcgcacgctcgagatggcggtgaccggc
atccgcgagatgtcgacgctcgcgacgccgccggaggaccgccagccgatcctcaccttc
gtcgggccgaagtcggatcgccagatcgcggccgccatccgccgcgagctcctccgcgag
gggcaggtgttctacgtccacaaccgggtctcgtcgatcaaccggatcgccgccgagctc
gcggagctcgtgcccgaggcgcgcatcgccgtcgcgcacggcaagctctccgagtcgagc
ctggagcaggtcatcgtcgacttctgggagcggaagttcgacgtgctcgtcacgacgacg
atcgtcgagaccggcctcgacatcccgaacgcgaacacgctcatcatcgacgacgccgag
cgctacggcctctcgcagctccaccagctgcgcgggcgcgtcggccgcggccgcgagcgc
ggctacgcgtacttcctctacgacggcgcgcgcccgctcaccgagaccgcgacggaccgc
ctcgagacgatcgcggcgaacaacgagctcggctcgggcatgcaggtcgcgctgaaggac
ctcgagatccgcggtgcgggcaacctcctcggcggcgagcagtcgggccacatcgcgggc
gtcggcttcgacctctacctccggatgatcggcgaggcggtctcgaccttccgcggcgag
gtcgccgaggggcagacggagctgcgactcgagctgcccgtcgacgcgcgcatcccggag
gagtacatcggctcggagcgcctgcgcctcgaggcgtaccagaagctctcgagcgcgtcc
tcgccgacggcgaaggcaggcgcgatcgacctcgtcgtcgaggagctgcgcgaccgctac
ggcgagccgccggccgaggtcgggacgctcctcgaggtctcgcgcctgcgccgcctcgcc
gtccgcgcccgcctctcggagctcatcgtcttcggcaagacgctccggatgtcgcccgtg
gagctgcccgactcgaagcagatgcgcctgcgccgcatgtatcccggcgcgaagctcgtc
gaggcgacgagctcgctcgccttcccgaacctcgaggcgcgcgacggcgggacgccgagc
gacgaggagatcatcgcgtggatccgcgggatcttccgcgcgatcttcgagctcgaggac
gaggaggccgaggaggggccggcctcgccggatgccgcgtcgaccgcttcggccgccgcc
gatgacgccgcgaaggccgcggagtcgggccgggaagcctag

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