Pseudoclavibacter triregionum: USB125703_01303
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Entry
USB125703_01303 CDS
T07344
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psev
Pseudoclavibacter triregionum
Pathway
psev03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
USB125703_01303 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psev03400
]
USB125703_01303 (mfd)
Enzymes [BR:
psev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
USB125703_01303 (mfd)
DNA repair and recombination proteins [BR:
psev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
USB125703_01303 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
AAA_22
DUF3638
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
CAG7845047
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All DBs
Position
1:1461219..1464860
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AA seq
1213 aa
AA seq
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MSIQAVVPALRDAEGFAAALESFGRSGDFTLVDGMRGPLLAGLLAERAPEARCLAAITAT
SREAEQLRDDLAAYLPQAELVELPAWETLPHERLSPSAETTGRRLVAMRALAEWKAGGRE
RPFVLLASVRAALQPLLPGLDEPRTIDLAAGSRGNDLEAISRRLVELAYSRVDMVTRRGE
FAVRGGILDVFPPDADHALRIDFFGDEIEEIRPFAVSDQRSLDAEVDAVRLTPSRELLLD
EGVRQRAREMRPEFPSLEQMLAKIEEGIPVEGMESLAPALVPGLVDLAHYLPEEAAVAVV
SPERVVTRALHLAETNKEFLAAAWSAATAGAQAPIDLAAGDFLTLPQLRESAGERAWWTL
SPLHQDDEDVAIDVPGDAVPSFSGNAEGALAHVASRLAAGWSVVIASRGHGLVERAAQLL
AEREQAGRPVDELPDALEPGVAYLVQSSVANGLELPAAKLAVLTEGDFYGRAAGVDARQP
RKLARRRGGTVVDPLQLKPGDLVVHDTHGIGRFRELAQRQVITNARTRQKTTREYLVIEY
APSKRGQPGDKLFVPTDQLDQLTRYVGGEEPALSKMGGQDWAAAKGRARKAVRDIAVELV
KLYSARMASKGHAFGPDTPWQRELEEAFPFAETADQLQTIDEVKRDMERPIPMDRLLSGD
VGFGKTEVAVRAAFKAVQDGKQVVMLVPTTLLVRQHLETFQARMAGFPVTIRGLSRFQSK
KESEETKRGLADGSVDIVIGTHRILTEGIAFKDIGLLIIDEEQRFGVEHKDALKKLKTNV
DILAMSATPIPRTLEMAVTGIREMSTLATPPEDRQPILTFVGPKSDRQIAAAIRRELLRE
GQVFYVHNRVSSINRIAAELAELVPEARIAVAHGKLSESSLEQVIVDFWERKFDVLVTTT
IVETGLDIPNANTLIIDDAERYGLSQLHQLRGRVGRGRERGYAYFLYDGARPLTETATDR
LETIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMIGEAVSTFRGE
VAEGQTELRLELPVDARIPEEYIGSERLRLEAYQKLSSASSPTAKAGAIDLVVEELRDRY
GEPPAEVGTLLEVSRLRRLAVRARLSELIVFGKTLRMSPVELPDSKQMRLRRMYPGAKLV
EATSSLAFPNLEARDGGTPSDEEIIAWIRGIFRAIFELEDEEAEEGPASPDAASTASAAA
DDAAKAAESGREA
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatccaggccgtcgtcccagcactccgcgacgccgaagggttcgcggccgcgctc
gaatccttcggccgatccggcgacttcacgctcgtcgacggcatgcgcgggccgctcctc
gccgggctcctcgccgagcgcgcgcccgaggcccgctgcctcgccgcgatcacggcgacg
agccgcgaggccgagcagctccgcgacgacctcgctgcctacctgccccaggccgagctc
gtcgagctgcccgcctgggagacgctcccgcacgagcgcctcagcccctccgccgagacg
accggccgccgcctcgtcgcgatgcgcgccctcgccgagtggaaggccggcggccgcgag
cgccccttcgtgctgctcgcgagcgtccgcgccgccctccagccgctcctgccgggcctc
gacgagccccgcacgatcgacctcgccgccggctcccgcggcaacgacctcgaggccatc
tcgcgccgcctcgtcgagctcgcgtactcgcgcgtcgacatggtgacccgccgcggcgag
ttcgccgtccgcggcggcatcctcgacgtcttcccgccggacgccgaccacgcgctccgc
atcgacttcttcggcgacgagatcgaggagatccgtcccttcgccgtctccgaccagcgc
tcgctcgacgccgaggtggacgccgtccgcctcaccccgagccgcgagctgctcctcgac
gagggcgtgcggcagcgggcccgcgagatgcggcccgagttcccgagcctcgagcagatg
ctcgcgaagatcgaggagggcatcccggtcgagggtatggagtcgctcgcgccggcgctc
gtgcccggcctcgtcgacctcgcccactacctccccgaggaggccgccgtcgcggtcgtc
tcgcccgagcgcgtcgtcacccgcgccctccacctcgcggagacgaacaaggagttcctc
gccgccgcctggtcggccgcgaccgccggcgcgcaggcgcccatcgacctcgccgcgggc
gacttcctcaccctcccgcagctgcgcgagtcggcaggggagcgcgcctggtggacgctc
tcgcccctccaccaggacgacgaggacgtcgcgatcgacgtgccgggcgacgccgtcccg
agcttctccggcaacgccgagggcgccctcgcgcacgtcgcgagccgcctcgccgccgga
tggtcggtcgtcatcgcgagccggggccatggcctcgtcgagcgcgccgcccagctgctc
gccgagcgcgagcaggccggccgccccgtcgacgagctgccggacgccctcgagccgggc
gtcgcctacctcgtgcagtcctccgtcgcgaacggcctcgagctgcccgccgcgaagctc
gccgtgctcaccgagggcgacttctacggccgcgccgccggcgtcgacgcgcgccagccc
cgcaagctcgcccggcgacgcggcggcaccgtcgtcgacccgctccagctcaagccgggc
gacctcgtcgtgcacgacacgcacggcatcgggcgcttccgcgagctcgcgcagcgccag
gtcatcacgaacgcgcgcacccgccagaagacgacccgcgagtacctcgtcatcgagtac
gcgccctcgaagcgcgggcagccgggcgacaagctcttcgtgccgaccgaccagctcgac
cagctcacccgctacgtcggcggcgaggagcccgcgctctcgaagatgggcggccaggac
tgggccgccgcgaagggccgcgcgcggaaggccgtccgcgacatcgccgtcgagctcgtg
aagctctactcggcgcgcatggcgtcgaagggccacgccttcggccccgacacgccgtgg
cagcgcgagctcgaggaggccttccccttcgccgagaccgccgaccagctccagacgatc
gacgaggtgaagcgcgatatggagcggccgatcccgatggatcgcctcctctccggcgac
gtcggcttcggcaagaccgaggtcgcggtgcgcgccgcgttcaaggccgtgcaggacggc
aagcaggtcgtcatgctcgtgccgacgacgctcctcgtgcgccagcacctcgagaccttc
caggcgcgcatggcgggcttccccgtgacgatccggggcctgtcccgcttccagtcgaag
aaggagtcggaggagacgaagcgcggcctcgcggacggctcggtcgacatcgtcatcggc
acgcaccgcatcctcaccgagggcatcgcgttcaaggacatcggcctgctcatcatcgac
gaggagcagcgattcggcgtcgagcacaaggacgcgctgaagaagctcaagacgaacgtc
gacatcctcgcgatgagcgcgacgccgatcccgcgcacgctcgagatggcggtgaccggc
atccgcgagatgtcgacgctcgcgacgccgccggaggaccgccagccgatcctcaccttc
gtcgggccgaagtcggatcgccagatcgcggccgccatccgccgcgagctcctccgcgag
gggcaggtgttctacgtccacaaccgggtctcgtcgatcaaccggatcgccgccgagctc
gcggagctcgtgcccgaggcgcgcatcgccgtcgcgcacggcaagctctccgagtcgagc
ctggagcaggtcatcgtcgacttctgggagcggaagttcgacgtgctcgtcacgacgacg
atcgtcgagaccggcctcgacatcccgaacgcgaacacgctcatcatcgacgacgccgag
cgctacggcctctcgcagctccaccagctgcgcgggcgcgtcggccgcggccgcgagcgc
ggctacgcgtacttcctctacgacggcgcgcgcccgctcaccgagaccgcgacggaccgc
ctcgagacgatcgcggcgaacaacgagctcggctcgggcatgcaggtcgcgctgaaggac
ctcgagatccgcggtgcgggcaacctcctcggcggcgagcagtcgggccacatcgcgggc
gtcggcttcgacctctacctccggatgatcggcgaggcggtctcgaccttccgcggcgag
gtcgccgaggggcagacggagctgcgactcgagctgcccgtcgacgcgcgcatcccggag
gagtacatcggctcggagcgcctgcgcctcgaggcgtaccagaagctctcgagcgcgtcc
tcgccgacggcgaaggcaggcgcgatcgacctcgtcgtcgaggagctgcgcgaccgctac
ggcgagccgccggccgaggtcgggacgctcctcgaggtctcgcgcctgcgccgcctcgcc
gtccgcgcccgcctctcggagctcatcgtcttcggcaagacgctccggatgtcgcccgtg
gagctgcccgactcgaagcagatgcgcctgcgccgcatgtatcccggcgcgaagctcgtc
gaggcgacgagctcgctcgccttcccgaacctcgaggcgcgcgacggcgggacgccgagc
gacgaggagatcatcgcgtggatccgcgggatcttccgcgcgatcttcgagctcgaggac
gaggaggccgaggaggggccggcctcgccggatgccgcgtcgaccgcttcggccgccgcc
gatgacgccgcgaaggccgcggagtcgggccgggaagcctag
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