KEGG   Polypterus senegalus (gray bichir): 120531238
Entry
120531238         CDS       T08668                                 
Name
(RefSeq) collagen alpha-2(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex04510  Focal adhesion
psex04512  ECM-receptor interaction
psex04518  Integrin signaling
psex04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:psex00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120531238
   04518 Integrin signaling
    120531238
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    120531238
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120531238
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:psex04147]
    120531238
   00536 Glycosaminoglycan binding proteins [BR:psex00536]
    120531238
Exosome [BR:psex04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   120531238
Glycosaminoglycan binding proteins [BR:psex00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   120531238
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   120531238
SSDB
Motif
Pfam: VWA Collagen VWA_2
Other DBs
NCBI-GeneID: 120531238
NCBI-ProteinID: XP_039612407
LinkDB
Position
6:complement(85767339..85835488)
AA seq 1007 aa
MTLQRFWIFLLFGALCNAETKCPDVLDCPIGIHFVIDTSESIALQILPPGGLVNQIKIFT
EQFVKKLEAETYKNHIQITFEFGGLHFSDRVEIFSDITKDPNAFISRLRNIKYFGRGTFT
DCALSNMTDNMFRHSSKETRARFAVVITDGHVTGNPCGGIKLRAERARDAGIRLFAVPAT
NNKYESGLREIANTPAELYRNNYLAITEANNINIETINRIIQVMKQEAYSECYKVTCLEY
EGPLGVKGYRGQKGAKGDIGQPGPPGEKGRQGDPGIEGPIGYPGPKGHPGLKGDKGEIGA
EGKKGVAGISGRNGTDGQKGRLGRIGPPGCKGDPGDKGPPGYPGDVGERGQSGDLGAKGD
AGRPGRRGPTGPPGDLGQKGERGGSGFPGLPGPKGAQGERGGEGPKGEQGRRGDPGQKGS
PGGKGAKGDKGDPGPEGQRGLPGEVGNKGSKGDIGLPGPRGPPGALGESGKNGSRGDPGD
VGQRGDPGSPGPKGDRGRTGLSYPGPRGTMGELGEKGNSGPQGGRGEYGLKGAPGVKGED
GNSGDPGPAGEPGPRGPRGEPGQVGDPGPAGDPGLSDCDVMTYVRETCGCCDCEKRCGAL
DIVFVIDSSESVGLTNYTLEKNFVINTVSRLGSIAKDPKALSGTRIGVVQYSHEGTFEAI
QLDDPRIDSLSAFKDAVKKLQWIAGGTWTPSALEYAYNQMIRQSRRDKARVFAVVVTDGR
YDPRDNSALLTSLCDKNIVVHAIGIGDMFRRKQESESLRDIACPSGNVTEMSNFVDLVAE
EFIDGMEERLCPEPVIVCPDLPCKTELAVAHCTQRPVDIVFLLDGSERIGDENFRHARNF
VEEVAQRLTLAKQDDDDLNARIAFLQYGGETEQQIAFSLTHNITTIMDSLSQVRYLDSSS
NVGSAIIYAINNIVNQQGGRQKAVRRNAELSFVFITDGITDSKNLAEALTSLRKADAMST
VIAVGSDVDSEVLSQLALGDRAAIFREKEFALLSRPGFSDRFIRWIC
NT seq 3024 nt   +upstreamnt  +downstreamnt
atgacattacaaagattttggatttttcttctatttggtgctctatgcaatgctgaaact
aaatgcccagatgtattagactgtccgataggcatacattttgtaatcgacacatctgaa
agcattgccttacagattcttccaccgggtggcttagtgaatcagatcaaaatcttcact
gagcaatttgtcaagaagttggaagctgagacatataaaaatcacatacagattaccttc
gagtttggtggcttgcacttctcagacagagtggaaatcttcagtgatatcactaaagat
cccaatgccttcatttctcgtctccgtaatattaaatactttggacggggaacattcaca
gattgtgctctatccaacatgacagacaatatgttcaggcactcttccaaggaaacccga
gctcgctttgctgtggtgatcactgatggacatgttacaggcaatccatgtggtggcatc
aaattgagagctgaaagagccagagatgcaggtatccgattatttgctgtgcctgccact
aacaataagtatgagtctggcctgagagagatagccaacactcctgctgaactatatagg
aacaactacttggcaatcactgaagcaaacaacataaatattgagaccatcaacaggatc
attcaagttatgaaacaagaagcctattcagagtgttataaagtgacctgtttggaatat
gaaggtccacttggtgtaaaaggctacagaggtcagaagggtgctaaaggagatattgga
caacctggccctcctggtgaaaaggggagacaaggcgaccctggtatagaaggtcccatt
gggtatcctggtccaaagggacatccaggtttaaaaggcgataagggagaaataggagct
gaaggaaagaagggtgttgctggtatttctggacgtaatggaactgatggccaaaagggt
agactgggaaggattggacctcctggatgtaaaggagaccctggtgacaagggacctccc
ggttatcctggagacgttggggaaagagggcaatctggagacctaggtgctaagggggat
gctggtcgacctggaagacgaggcccaacaggacctcctggagacttgggccaaaagggg
gagagaggaggttctggatttcctggtcttcctggacctaaaggagctcagggcgagaga
gggggagaaggacccaaaggagagcaggggcgaagaggtgacccaggacaaaagggaagc
cccggaggaaaaggtgccaaaggggataagggcgatccaggtcctgagggtcagagaggt
cttcctggagaagttggaaataaaggttctaagggagacattgggctgccaggtccaaga
ggtccaccaggagcattaggagaatctggaaaaaatggctcacggggagacccaggagat
gttggacaaaggggagacccaggctcaccagggccaaaaggtgacagaggaagaactgga
ctcagctacccaggtccacgtggaaccatgggtgaacttggggagaaaggcaattctggg
cctcagggtggcagaggtgaatatggattgaaaggagctccaggggttaaaggagaagat
gggaactcgggtgatcctggtcctgcaggagaaccagggccacgtggtcctagaggagaa
ccagggcaagtaggtgatcctggtccagctggcgatcctggtttatcggattgtgatgtt
atgacctacgtcagagagacctgtgggtgttgcgactgtgagaagcgttgtggtgccctg
gatattgtgtttgtaattgacagctcagaaagtgtgggccttaccaactacacacttgag
aaaaactttgtcatcaacacagtcagcagactgggctccattgctaaagatccaaaagct
ctttcaggaactcgtattggtgttgtccagtacagccatgagggcacttttgaagctatc
cagcttgatgatccacgcattgattccctgtctgcctttaaagatgccgtgaagaagctc
cagtggattgcaggtggcacatggactccctctgcccttgagtatgcctacaatcaaatg
atcagacagagcaggcgtgacaaagctagagtgtttgcggttgttgttactgatggccgt
tatgaccctagggataattctgcccttctgacatctctttgtgataaaaatattgttgtc
catgcaattggaattggtgacatgttccgccggaaacaggaaagtgagagtttgagggac
attgcctgcccaagtggcaatgttaccgagatgtcaaactttgtcgatttggttgctgag
gaattcattgatggaatggaggaaagactgtgtccagaaccagttattgtttgcccagat
cttccgtgtaaaacagagcttgcagttgctcattgcacccagcgtccagttgatattgtc
ttcctactagatggttctgagcgaataggagatgaaaacttccgacatgctcgcaacttt
gtggaagaagtggctcaaaggctaacattggcaaagcaagatgatgatgacctcaatgca
cgcattgcttttctacagtatggtggagaaacagaacaacagatagccttctctttgacc
cacaacattaccactataatggatagcctgtcacaggttcgctatcttgactcctcctcc
aatgtgggctcagctatcatttatgccattaacaacattgtcaaccaacagggaggtagg
cagaaggctgttagacgcaatgcagagctctcgtttgtcttcatcactgatggaataaca
gatagcaaaaatcttgcggaggcgctgacttctttgaggaaagcagatgcaatgtcaaca
gtgattgctgttgggagtgacgtggattcggaggttctttcacagcttgcgcttggagac
cgggcagctatcttcagagagaaagaattcgctctgctctctagacctggcttttctgat
cgattcattaggtggatttgttag

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