Polypterus senegalus (gray bichir): 120533455
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Entry
120533455 CDS
T08668
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03008
Ribosome biogenesis in eukaryotes
psex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120533455 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
120533455 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120533455 (xrn1)
03009 Ribosome biogenesis [BR:
psex03009
]
120533455 (xrn1)
03016 Transfer RNA biogenesis [BR:
psex03016
]
120533455 (xrn1)
03036 Chromosome and associated proteins [BR:
psex03036
]
120533455 (xrn1)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120533455 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
120533455 (xrn1)
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
Pre-60S particles
RNases
120533455 (xrn1)
Transfer RNA biogenesis [BR:
psex03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
120533455 (xrn1)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120533455 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
NRIP1_repr_3
Motif
Other DBs
NCBI-GeneID:
120533455
NCBI-ProteinID:
XP_039616304
LinkDB
All DBs
Position
1:complement(148290472..148419161)
Genome browser
AA seq
1758 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKAVEKGE
TLPTEARFDSNCITPGTEFMARLHEQLKYFVNNKITTDKSWQGVKVFLSGHETPGEGEHK
IMEFIRSEKAKPNHDPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSILRKTIPFDYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPKLGGYINENGNLNLNHFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGMAAEEARNHKGKRLKKQEDVLCLAAFDGNKEPADVPTKELPDDE
NDEDLFETEFRQYKRTYYMTKMGVEVVSDEFLAHQAECYVQAIQWILHYYYHGVQSWSWY
YPYHYAPYLSDIHGNSTIKLEFTMGNPFMPFEQLLAVLPAASKDLLPVCYQNLMTSENSP
IFDYYPLEFKTDLNGKQQEWEAVVLIPFIDEKRLLAAMEPCNNFLTEEEKQRNRHSACEV
YWFDKELEFYYPSPLPKLFPSIQKCHARSELIPMDAWHVDVSYIGNKVDNSALYFCGFPT
LKHIKHTFFLKKAGVQVFQQSSRGENLMLEIILNDQKELTSEDVASLVLGKSVFVNWPHL
EEARVVAVSDGETKFYLDEPPGTQKLYSDKTVPPTRVVYLNDKEESIWMKEVQGITEFYH
KRKGIIINETAVLLFAQLLTGRKYVLTSKGDVVLEKQWSKQILPFAYQATVNDIVAFDSS
FCHYKTVDELFSPSTTVFMLGNTYYGAMGEVQDSADVVKEGRIRVLFTVPCEPQLEALMQ
NQHKYSVKYSPGYVLASRLGISPYLVSRFSGSIFVARGSKKNQHGEQKANIGLNLKFNKK
NEEVPGYTKKSGNEWLYSVAVEELLAEYLERFSEVFNYVSKNSNEDIFYEDDIWPGQDEN
GAEKVEEIITWLKTNPVSSCSRASCDLQVLDAAIILKIEEEVEKCKLKRSNKKVRVTVKP
HLLYRPLEQQYGVIPDKDADYRLFDRVVNVRDCFTVPLGFRGTVTGIKGADRESEILYEV
VFDEEFPGGLTIRCSPGRGYRLSPSALINLSHGYRLEYGGQRLTAIVKPQQQPAAAYFST
QKVQIGGLNHSPRSPFVPTKQLNGKQQSNPKIENQINWHGPQRMINQKNIQKDKDDEYSS
VWHSLQMSGNPTSSLPLWEDSSSKHGSGGGYQTQNTMKTQQRLKHEHSVAQGYSKKYTDD
DKGHYIESSQQTGRAQTKQNPCVSEKPTIRLLKKSEDVSDISTSQTPGSDQISAGKVSSE
FQDLMASVKISNASDSPSTQFKDESSKEPLSPQSFAMQGTLVLKEMLKIEGSSSAQMDKD
KTTPTAPSSSSTNTSHPTRRRSTKKLAAHINKPQVSELLHQNHTAEKSNQQQGPLQSTLV
VELSRICAGLNLSPPDFGFLKTPQGMTVCQVKLSNGLLVHGPQCLSENEAKEKAALFALQ
RLSSIGPSFPLPPHVFSNVQQMRPAVPSGPIPTIFGQHPRNLMMHPNPHAFGPICWGAPI
QIQGPPFYKGPFSGNRLPTQAIPVGTHNQFVPLQVTKKRVSNKKNYETKESAASEYVKHQ
RTEHADKIEDLNSVVQTVCTPSVPTATPQASIDNQDLRDSKAPFTPRQTRNHTTPSSSGR
RKPRKLAVNFDAAKVTEQ
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccgaaattttatcggtggatatcggagcgctatccttgtctgagcgaagtt
gtaaaggagcaccagattccagagtttgataacctctatttggatatgaatggaattatt
catcagtgttcgcatcctaatgatgaagatgtccactttcgaatatcagaagaaaaaata
tttacagacattttccattatttagaagtgctgtttcgcattattaagccaaggaaagtt
tttttcatggcagttgatggggttgccccaagagcaaaaatgaaccagcagcgtggaagg
cgttttaggtctgcaaaagaagccgaagaaaaaatcaagaaggcagtagaaaagggagag
actcttcctacagaggccaggtttgactccaattgtattacaccagggacggaattcatg
gccagacttcatgagcaattaaagtattttgtaaataataagattactacagacaagtca
tggcaaggggtcaaagtgttcttatcaggtcatgagacacctggtgaaggggaacataaa
atcatggaattcattaggtctgaaaaagcaaagcctaatcatgatcccaatacaagacac
tgcctttatggtctagatgctgatctgatcatgcttggattgacaagccatgagccacac
ttctctcttttgagggaggaagtcaggtttggtgggaaaaaatcacagaaaaggataact
gccccagaagaaacaacatttcatttattgcatttgtcactaatgagagagtatattgac
tatgagttttcaatattacggaaaactattccatttgattatgaccttgagcgcataatt
gatgattggattttaatggggtttcttgtgggaaatgactttatacctcatctacctcat
ttgcatataaaccatgatgcactgccactactttacagaacttatattagtgtcttgcca
aaactggggggttacattaatgaaaatggaaatttaaatttgaatcattttgagaagtat
cttgaaaagctttcagagtttgaccgagaacactttagtgaagtgtttgtagatctgaag
tggtttgagagcaaagttggaaataaataccttaatgaggctgcaggcatggcagctgaa
gaagcaagaaatcataaagggaaaagactcaagaaacaagaagatgtcctttgtttagct
gcgtttgatggaaacaaagaacctgccgatgttcctaccaaagagttgcctgatgatgag
aatgatgaagacttatttgaaacggagtttaggcagtataaaaggacatattacatgacc
aaaatgggggttgaagtggtatcggatgaattcctggctcatcaagcagagtgttatgtt
caagcaatacaatggattttgcactactactaccatggagttcagtcttggagctggtac
tatccttaccattatgcaccttatttgtcagatattcacggcaacagcacaataaagctt
gaatttactatgggaaacccgtttatgccgtttgagcagttgctggctgttttaccagct
gcaagtaaagatctattacctgtttgctatcagaatttaatgacttcagagaactctcca
atctttgattattatcctctcgaatttaaaacggatctcaatggtaaacagcaagaatgg
gaagctgttgtcttaattccatttattgatgagaaacgtttactggcagctatggaaccc
tgtaataattttctgactgaggaagaaaagcaaagaaatcgacacagtgcatgtgaagtg
tattggtttgataaagaactagagttctattacccttctccactgcctaagctttttcct
tctattcaaaagtgccatgcaaggtctgaactaataccaatggatgcttggcatgttgat
gtctcctacattggaaataaagttgataatagcgctctctatttttgtggttttccaaca
ttaaagcatatcaaacatacattcttcttaaagaaagctggagtacaagtgtttcagcag
agtagtcggggtgaaaatctgatgctggaaataatacttaatgatcaaaaggaactgact
agtgaagatgttgcttctttggtgcttggtaaatcagtatttgtaaactggcctcattta
gaagaagccagagttgttgctgtctcggatggagaaaccaaattttacttggatgaacct
cctggaactcagaaactatattcagacaaaacagtgccaccaacaagagttgtttattta
aatgacaaagaagaatccatttggatgaaagaagtgcaaggcatcacagaattttaccat
aaaaggaaaggcatcattataaatgagacggcagtcttgctatttgcccagctgctgaca
gggcgtaaatatgtactgacttcgaaaggagatgttgttttggaaaagcagtggtcaaag
cagattttgccctttgcttatcaagctacagttaatgacattgtggcttttgattccagt
ttttgccattataaaacagttgacgaattgttctcaccatcaaccactgtttttatgctt
ggaaacacatactatggagccatgggagaggtccaagattcggctgatgttgttaaagaa
ggacgaatccgtgttctttttacagttccttgtgaacctcagcttgaagccttaatgcaa
aatcagcataaatactcagtaaagtacagtcctggctatgttttagctagtcgacttgga
ataagtccgtatcttgtctccaggttttcaggaagcatctttgttgcaagaggttcaaaa
aaaaatcaacatggagaacagaaagcaaatattggactaaatctcaaatttaacaagaaa
aatgaagaagttcctggctacactaaaaagtctgggaatgaatggttgtactctgttgct
gtagaagaactccttgcagaatatcttgagaggttctctgaagttttcaactacgtttcc
aaaaatagtaatgaggacattttttatgaggatgacatttggccaggacaagatgaaaat
ggggcagaaaaggttgaggaaattattacatggctgaaaacaaatcctgtgagctcatgc
tcacgggcatcctgtgacttgcaagtacttgatgctgcaatcattctgaagatagaagaa
gaagtagagaaatgcaaactaaaaagaagcaataagaaagtgagagtcactgtgaaacca
catcttttgtacagacctcttgaacaacagtatggagttattcctgataaagatgcagat
taccgactttttgacagggtggtgaatgtccgtgattgcttcactgttcctttgggtttc
cgcggcactgttacaggaattaaaggagctgacagagaatctgaaatactttatgaagta
gtctttgatgaagaatttccaggtggcctcacaataaggtgctcaccaggccgtggatac
agactttctccaagtgccttaataaatctgtcacatggttatcggcttgaatatggaggt
cagaggctgactgccatagtgaaaccacaacaacaaccagcagcagcatactttagcaca
cagaaggtacaaattggtggccttaaccactctccacgttcaccatttgtacctactaag
cagcttaatggaaaacaacaaagtaatcccaaaattgaaaatcaaataaactggcatgga
ccacaaagaatgattaaccaaaaaaatatacagaaggataaagatgatgaatattcaagt
gtgtggcattcattacaaatgtctggaaatcctacaagttctttgccgctctgggaggac
agttcaagtaaacatggatctggaggaggctaccagactcaaaacactatgaaaacacag
cagcgtcttaagcatgaacactctgttgctcaaggatattctaaaaaatatacggatgat
gataaaggccattatatcgagtcttctcagcagactggcagagcccaaaccaaacagaat
ccatgtgtaagtgagaagccaactattcgccttctaaagaaaagtgaagatgtgtctgat
atatccacatctcagacccctggctcagatcagatatctgcaggaaaggtatcttctgaa
tttcaagacttgatggccagtgtgaagatttcaaatgcaagtgattcaccttctacacag
ttcaaagatgaatcctcaaaagagcctttgtctccacagtcatttgcaatgcaaggaaca
cttgtacttaaagaaatgcttaagatcgaaggatctagctctgctcagatggataaagac
aagactactccaactgcaccatcttcttcctctactaatactagtcacccaacaagacga
agatccactaagaagctagctgctcatatcaataagcctcaggtgtctgaattattacat
caaaaccacactgctgaaaagtccaaccagcaacaaggacctctgcaatcaactttagta
gtagagctgtctcgtatttgtgcagggcttaacttgtctcccccagactttggctttctt
aaaactccacaaggaatgacagtgtgccaggtaaaattgtctaacggcttacttgtgcat
ggacctcagtgcctttctgaaaacgaagcaaaagaaaaagctgctttatttgctctgcaa
cgtctgagttccattggtccaagcttcccactgccacctcatgttttttcaaatgttcag
cagatgagacctgctgtaccatctgggcctataccaaccatatttggacagcatcctaga
aatctaatgatgcatcctaatccccatgcctttggcccaatttgctggggtgccccaatt
caaatccaaggaccaccattttataaaggcccattttcagggaacaggctgccaactcaa
gctattcctgttggaactcacaaccaatttgtacctctgcaggtcacaaagaagagagtc
tcaaacaaaaagaattatgaaaccaaggaaagtgccgcctctgaatatgtcaaacatcag
aggactgaacacgccgataagattgaagatttgaactctgttgtgcaaactgtatgcacc
ccttcagtccctacagccacccctcaggcatctatagacaatcaggacctcagagatagt
aaagccccatttacaccacgacagactcgcaatcatactacaccctcatcttcaggtaga
cggaaaccaaggaaactggccgttaactttgatgcagcaaaagtgactgagcaatag
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integrated database retrieval system
