Polypterus senegalus (gray bichir): 120535304
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Entry
120535304 CDS
T08668
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120535304 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120535304 (cnot1)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120535304 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120535304 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
120535304
NCBI-ProteinID:
XP_039618989
LinkDB
All DBs
Position
9:complement(45440047..45589369)
Genome browser
AA seq
2378 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSCSPDLKSFAAQFVKQKIPDLLRSYVDADVGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKNMMESSLADFMQEVGYGFCASLDECRNIIMQYGVREVTACQVARVLGMMART
HSGLSDGIPLQSISTPGSGIWSDGKDKSDGSQVHTWNVEVLIDVVKELSPTLNFKEVTYE
LDHPGFIIRDSKGLQIVVYGIQRGLGLEVFPVDLLYRPWKHAEGQLSFIQHSLANPEIFC
FADYPCHNVATDILKAPPEDDNREIATWKSLDLIEILLRLSEVGQYEQVKQLFTFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQIDPLSGMAAL
AIGGSAASHTQSIQGFPTNLGSAFSNPQSPAKAFPALTNPSQSTPFSTIGALSSQLPGSL
GTSNLTGIGSSALGLPAVSSDPFGQRKMSTSGLNPPTFQQTDLSQVWPEANQHFSKEIDD
EANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYP
DKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLK
DYPQYCQHLASIAHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQAQV
PPKASLPGQVSTVVTTSTTTTVAKTTTITRPTGVGFKKDVPPSINTTNIDTLLVATDQTE
RIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFH
SLYSNFLDTLKNQEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAK
NKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVIFRPQNPWTMAIMNVL
AELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKNLDEQLSAPKKEAKPA
EELLPVVTTGDFLPFAAASSTPATTTACTTTGPPTPQFSYHDINVYSLAGLAPHININPN
IPLFQTHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRV
AAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFASALRAPTPQQREMMEQAAAQIAQDN
CELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRL
KVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCITE
LEQHLHAVPPALAMNPQTQALRSLLEAVVLARNSRDAIAALGLLQKAVEGLLDATSGADA
DLLLRYRECHLLVLKALQDGRAYGSHWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVN
MQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDDRSVSHITEADLFHTIETLMRTSAHS
RANAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLRE
WVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQ
HNPAASVAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDH
DVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAW
LELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRV
LLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEI
NIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINAL
VLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPN
SHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFW
NHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
actaagaaaaactaccgagccagccagcaagaaatacagcatattgtgaatcggcacggc
cccgaggcagacaggcatttgttacgctgtctattctcgcatgtggattttagtggcgat
ggtaaaagcagtggaaaggattttcatcagacacagtttctgatccaggagtgtgcatct
ctcatcaccaagccaaactttatctcaacgctttgctacgctattgacaatcctttgcat
tatcaaaagagtctgaagccttcacctcacttgtttacccagttgagtaaggttctcaag
ctaagtaaagtacaagaggtaatatttggccttgccttgctgaattcttgcagtccagat
ctgaaaagttttgcagcccaatttgtgaagcagaaaatacctgacctgctccgctcttac
gtagacgcggacgtagggggtaaccaagaaggtggcttccaagatatagcaattgaagtc
ctgcacctgctcctctcccatctcctctttggacaaaagggagcttctggtgttggacag
gagcagatagacgctttcctcaagactcttcgcagagattttcctcaggagcgctgccct
gtggtgcttgcaccactgctttaccctgaaaaacgggacattctgatggacaggatccta
ccagattctggagggatagctaaaaacatgatggagagctcccttgcagattttatgcaa
gaagtgggatatggattttgtgcaagtcttgatgaatgccgtaacatcataatgcagtat
ggagtcagagaggtaacagcatgccaggtagccagagttcttggaatgatggcacgcact
cattcagggttatctgatggtattcctcttcagtcaatctccacccctggcagtggcatc
tggagtgatggaaaggataaaagtgatggttcccaggtgcacacatggaatgtggaagta
ctaattgatgttgtgaaagagctgagccccactttaaactttaaagaagtaacatatgag
ctggaccatcctggatttatcattcgtgattccaaaggccttcagatagtggtgtatggt
atccaaagaggcttaggcttagaggtattcccagtagatctgctctacagaccttggaaa
catgcagaaggccagctttcatttattcagcattccttggcaaacccagaaatattctgt
tttgcggattacccatgccacaatgttgctacagatattttaaaagctccaccagaggac
gataatcgtgagattgcaacatggaagagtttggacctgatagaaatcctcctacgactt
tcagaggtgggacagtatgagcaagtgaagcagctttttacgttccctatcaagcactgt
ccagacatgttggttctggccttactacagatcagtacctcctggcacacattacgtcat
gaactaatatcaactttgatgccaatctttcttggcaatcatcccaattctgccatcatt
ttgcactatgcatggcatggacagggccagtcgccttctatccgtcagttaatcatgcac
tcaatggcagaatggtatatgaggggagaacagtatgaccaggccaagctttcccgcatt
ttggatgttgctcaggacttgaagtctttatccatgctgctaaatggtactccatttgcc
tttgttattgatcttgctgcactagcgtctcgtcgagaatacctcaaattagacaaatgg
ttgacagataaaattcgagagcatggggagccattcatccaagcctgtgttaccttttta
aaaagacgctgtccttccatcatggggggattggccccagaaaaggatcaaccgaaaagt
gcacagttgcctccagaaactttggcaacaatgcttgcttgtttgcagtcctgtgctggg
agtgtttctcaggagctctcagaaactatcttaactatggtagcgaactgcagtaatgtc
atgaataaggctcgacagccacctccaggagtaatgccaaaaggccgggctcctagcacc
agcagtttagatgctatttctcctgtgcagattgatcctttgtcaggaatggcggctttg
gcaattggtggctctgctgcctctcatacacagagcatccagggttttccaacgaatttg
ggatctgcttttagtaacccacaatctccagcaaaggcttttcctgctcttactaatccc
agccagtcaactcccttcagtaccattggtgccctttcttcgcaattgccaggttccttg
ggtactagcaacctgacaggtattggcagtagtgcacttgggttaccagctgtgagcagt
gatccttttggacagaggaagatgagcacatctggattaaacccaccaaccttccagcag
actgacctttctcaggtatggcctgaagcaaaccagcactttagcaaagagattgatgat
gaagcaaacagctacttccaacgaatttacaaccatcctccccatcctacaatgtctgta
gatgaggtgctggagatgttgcagagatttaaagattctaacattaagcgggagcgggaa
gttttcaactgtatgctgaggaatctttttgaggagtaccgcttttttcctcagtacccc
gacaaggaactacacatcactgcatgtctgtttggtggaataatcgagaaaggccttgta
acctacatggccctagggcttgcactacgttatgtccttgaagctttaagaaagcctttt
ggatccaaaatgtattactttggtattgctgcactagacaggtttaaaaatagattgaag
gattatccccaatattgccagcacttggcttccattgctcactttatgcagtttccacat
cacttacaggagtacatagagtatgggcaacaatcaagagacccacctgttaagatgcaa
gggtcaattactacacctggcagccttgctcttgcacaagctcaggcccaagcacaagtc
ccccctaaagcatctcttccagggcaggttagcactgtggtaactacatccaccacaacc
actgttgccaaaaccactactattacccgccccactggagttggcttcaagaaagatgtt
ccaccgtctattaatacaaccaatattgacacactgcttgtagccactgatcaaacggag
aggattgtggagccacctgaaaatgttcaggaaaaaatagctttcatctttaacaatctt
tcccagtcaaacatgacacagaaggtagaagaactgaaggaaactgttaaggaggaattt
atgccttgggtatcccagtatcttgtaatgaagagagtcagtatagaaccaaacttccat
agcctttactccaattttttggatacattaaaaaaccaagagtttgttaaaatggtcctt
aatgaaacatacagaaatattaaggttctcctcacatccgacaaggctgcagccaacttt
tctgacagatcactattgaaaaatctaggacactggcttgggatgattacactggcaaag
aataaacccattctttacacggatttagaggttaaatcattgctgctggaagcctatgtt
aagggacagcaagagcttctgtatgtggttccttttgttgccaaagtcttagaatccagt
gtgaggagtgtgatattcaggcctcagaacccctggacaatggccattatgaatgtttta
gcagaacttcaccaagaacatgatttaaagctcaatctcaaatttgaaattgaagtactt
tgtaagaatctttcccttgacatcaatgaccttaaacccggaaatttattaaaggataaa
gataaacttaaaaatttagatgaacagttatctgcaccaaagaaggaagctaaacctgct
gaagaattgctccccgtagtgacaactggagactttctcccctttgcagcagcttcatcc
actcctgctacaactacagcttgtacaaccactggtccaccaacacctcagttcagttat
catgatatcaatgtctattccctagcaggactagctcctcacatcaatatcaaccccaat
attcctttattccagactcacccacaactcaagcagtgtgttcgacaggccatagagaga
gcagttcaagagcttgtccatcctgtagttgaccgttccataaaaattgccatgacgact
tgtgagcagattgttcgtaaggactttgcccttgactcagaagaatctcgtatgcgtgtt
gctgcccatcatatgatgcgcaatttgacagctgggatggcaatgattacttgccgagaa
cctcttcttatgagcattgctacgaacctaaaaaacagctttgcttctgctctcagggct
ccaactccccaacagcgagaaatgatggagcaagcagcagcacaaatagcacaagacaac
tgtgagcttgcctgttgctttattcagaaaactgcagtggaaaaagctggaccagaaatg
gacaaaagacttgcaactgagtttgagttgcgcaagcatgctagacaagaaggccgccgt
tactgtgacccagttgtactaacgtatcaagcagaacgcatgcctgagcaaatcagactt
aaggttggaggtgttgatcctaaacagctggctgtttatgaagagtttgcccgaaatgtt
cctggattccttcctagtaatgatttatcccaaccaactggttttcttgctcagccaatg
aagcaacaagcctgggctacagacgatgttgcacagatatatgataagtgtattactgag
ctggagcaacatctgcatgccgttcctcctgcattggctatgaatcctcaaacacaagca
cttagaagtctgttggaagctgtagtgctggccagaaattctagggatgcaattgctgca
cttgggctgctgcagaaggcagtagaaggattgttggatgctaccagtggcgctgatgca
gatctgcttctccgatatcgggaatgtcatctacttgtacttaaagcactgcaggatggt
cgtgcctatgggtctcactggtgtaacaaacagattactaggtgcctgattgaatgtcgt
gatgaatacaagtacaatgttgaagcagtagaactgctaatcagaaatcatcttgttaac
atgcagcagtacgatttgcatttggctcagtctatggagaatggcttacattacatggca
gtggcatttgccatgcaactggtgaagctgctgcttgttgatgacagaagtgttagtcat
atcacagaagcagaccttttccacacaattgagactctcatgagaacaagtgcacactcg
cgtgcaaatgctcctgaaggacttccacaactaatggaggtagtaaggtcaaactatgaa
gcaatgattgatcgtgcccatggaggacccaatttcatgatgcactccgggatctctcaa
gcatctgaatatgatgacccgccaggattaagggagaaggcagaatatctcctgagagag
tgggtgaatctgtaccattctgcggcagctggcagggatagcactaaggctttctctgct
tttgtaggacagatgcaccagcaaggaattctcaaaacagatgatctgataacccgattt
tttcgcctgtgtacagaaatgtgtgtagaaatcagttatcgtgcacaagcagagcagcag
cacaaccctgctgcaagtgttgcaattatccgtgccaaatgttaccacaacttagatgcc
tttgtcaggcttattgcactactagtcaagcattctggagaagctaccaacactgtgaca
aaaataaatcttcttaacaaggttcttggtatagttgttggagtgttaattcaagatcat
gatgtacgtcaaactgaatttcagcaacttccttatcatagaatttttattatgctgctt
ttggaattgaatgcaccagagcatgttctggaaaccattaactttcaaacgttaactgct
ttctgcaatacattccatattctgaggccaacgaaagctcctggttttgtttatgcttgg
cttgaactgatttctcatcgaatattcattgctaggatgctggctcatacaccgcagcag
aagggttggccaatgtatgctcagctgctaatagatcttttcaaatacttggctccgttt
ctgcggaatgttgagctgaacaaacctatgcaaattctatataagggtactctgcgtgtg
ctattggttcttcttcatgacttcccagaattcctgtgtgattaccattatgggttttgt
gatgtgatcccacctaactgtattcagctacggaatcttattctcagtgccttcccacgc
aacatgagactacctgaccctttcacccccaacctcaaggtggatatgctgagtgaaata
aatattgcacctcgcattctaacaaattttactggagtaatgccacctcagtttaagaag
gatttggattcctacctaaaaacacgttctcctgtcacctttttatcagagctacgtagc
aacctgcaggtttctaatgagccaggtaatcgctacaacatacaacttatcaatgcactt
gtattatatgttggaactcaagctattgcacacatccacaacaagggaagcacaccatca
atgagcactataacacactctgcccacatggacattttccaaaacctcgctgtggacctg
gatacagaaggacgatacctttttctcaatgcaattgccaatcagctgcgctaccctaac
agccacactcactacttcagttgtactatgttgtatctctttgctgaggccaatacggaa
gctatacaggagcaaatcaccagggtcctacttgaaagattgatagtaaaccggccgcat
ccatggggtctgcttattactttcatcgagctaataaaaaacccagcattcaagttctgg
aaccatgattttgttcactgtgcaccagaaattgaaaagttgttccaatcagtagctcag
tgctgtatgggacaaaaacaagcacagcaagtaatggaaggcactggtgccagttag
DBGET
integrated database retrieval system
