Polypterus senegalus (gray bichir): 120538123
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Entry
120538123 CDS
T08668
Symbol
clp1
Name
(RefSeq) LOW QUALITY PROTEIN: polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120538123 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120538123 (clp1)
Enzymes [BR:
psex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
120538123 (clp1)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120538123 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_18
TniB
GTP_EFTU
AAA_16
MMR_HSR1
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120538123
NCBI-ProteinID:
XP_039623490
LinkDB
All DBs
Position
10:173458056..173471260
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AA seq
425 aa
AA seq
DB search
MATEEPSKDEKGGVKFDLEKETELRFEVDSGDKVQLELLSGLAEIYGSELNRNKKYTFES
GCKIAVFTWQGCSVQLTGKTEVAYVSRDTPMFLYLNTHAALEQMRQQAEKENERGPRVMV
CGPMDVGKSTLCRLLLNYAVRLGXPTLVELDVGQGNIAIPGTMGALCIERPADVEEGFSV
QAPLIYHFGSTTPGTNIKLYNKITSRLAEVFNQRCDMNHKACVSGCVINTCGWVKGSGYQ
ALVHTASAFEVDVVIVLDQERLYNELKRDLPFFVRTVLLPKSGGVVERSKDYRRESRDEK
IREYFYGFRGGFFPHAFDVRFSDVRIYKIGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
LVHHLLSVSTADSPDENIIETSVAGFIVVTNVDTEHQVFTVLSPAPRPLPKNILLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctacagaggagccttccaaagatgagaaaggcggtgtaaagtttgacctggaaaag
gagacagaattgcgctttgaggtggactccggagataaagtacagctggagctgctttct
ggccttgcagaaatctatgggtctgagctgaaccgcaataagaagtacacgtttgagtcg
ggatgcaaaattgctgtgtttacctggcagggctgctcggtgcaacttactggcaaaact
gaggtggcttatgtttctcgggacaccccaatgttcctttatcttaatacccatgctgct
cttgaacaaatgagacaacaggctgaaaaggagaatgaaagaggaccaagggtgatggtc
tgtggtcctatggatgttggaaaatctacactgtgcaggctacttttgaactatgcagtt
cgacttggcnggccaacgcttgttgagctggatgtaggtcagggaaacatcgccatcccg
ggcaccatgggagccttgtgcattgagcggccagcagacgtggaggaaggcttttcagta
caggcaccgctaatctaccactttgggtctacaactcctggaactaatatcaagctatat
aataagatcacttctcgactggcagaagttttcaaccagagatgcgacatgaaccacaaa
gcctgtgtgagtggctgtgtgattaacacttgtggctgggtgaaaggttctggataccag
gcactagtgcacacagcatctgcttttgaggtggacgttgtcattgtgttagaccaggag
aggctgtacaatgagctgaagcgggacctccccttctttgtacgtaccgtgctgcttcct
aaatctgggggtgtggtagagcgctcgaaggactaccgacgagaatctcgagatgagaaa
atccgggagtacttttacgggttccgtggtgggtttttcccacacgcctttgatgtccgg
ttttctgacgtacgcatttacaaaatcggtgcaccaaccatcccggactcttgcctgcct
ttgggtatgtctcaagaagacaaccagctgaagcttgtgccagtcaccccaggtcgagat
ctggtgcatcatcttctcagtgtcagcactgccgacagcccagatgaaaacattattgag
acaagtgtggcgggatttattgtggtcacaaacgtagacacggagcatcaggtcttcacg
gtactttcaccagcaccacgcccgttgccaaaaaacatcttactgattatggacatacgc
ttcatggatctcaagtaa
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