Pseudarthrobacter psychrotolerans: GU243_13015
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Entry
GU243_13015 CDS
T06403
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psey
Pseudarthrobacter psychrotolerans
Pathway
psey03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GU243_13015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psey03400
]
GU243_13015
Enzymes [BR:
psey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GU243_13015
DNA repair and recombination proteins [BR:
psey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GU243_13015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QHK20498
UniProt:
A0A6P1NMJ2
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All DBs
Position
contig_1:2772687..2773928
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AA seq
413 aa
AA seq
DB search
MSPSKTPAQILNIGGTEVRISSPDKVVFPGPGLTKLDLVHYYLAVADGALRGAGGRPMVL
KRFPKGIDAEPFFQKRVPENHPAFIDTTTLHYASGTSAEEAVIRDAAGLAWVVNLGCLDL
NPHPVRAEDLEHPDELRVDLDPMPGVDWAQIVDVAYVVREVLDDVGLVGWPKTSGSRGLH
ILVRIAPQWSYRDVRLAAETLAREVENRAPGLATARWWKEERGESVFVDFNQNAKDRTVA
SAYSIRPLPDARVSTPLTWDEVRTIRPEQFTVRTVLERFADVGDPHAGIDHAAGTLDGLL
ALAAELGPAEKAPRTGDGSGRRQSLMPLIEVARTRSKPEALAALDEWKSRHGDLIPALHT
ADVLVDGMRGSSSLWYRVRVNLQHVPEAERPPQEQLIADYDPWAGKQWPGRPG
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgtcgaagaccccggcccagatcctcaacattggcggcaccgaggtgcgcatc
tcgagtccggacaaggttgtgttcccggggcccgggctgacgaagctagacctggttcac
tattaccttgccgtcgcggatggtgcgctgcgcggtgcgggcggccggccaatggtgctc
aagcgattcccgaagggcatcgacgctgagccgttctttcaaaagcgcgtgcccgaaaac
catcccgccttcatcgacacaacgacgctgcactacgcgtcggggacgtcggccgaggag
gccgtcatccgggatgctgcgggcctggcgtgggtggtgaatcttggctgcctcgacctc
aacccgcatcccgtgcgcgccgaggacctcgagcaccctgacgagctccgggtcgacctc
gatccgatgccgggggtcgactgggcccagatcgtcgacgtcgcgtacgtggtgcgggag
gtgctcgacgacgtcggactcgtggggtggccgaagacgagcgggtcacgcggactccac
atcctggtgcgtatcgcgccgcagtggtcgtaccgcgacgtgcggctcgccgcggagacc
ctcgcccgcgaggtcgaaaaccgcgcccccggcctcgccacggcgcggtggtggaaggag
gagcgcggcgagagtgtgttcgtcgacttcaaccagaacgccaaggaccgcaccgtcgca
tcggcgtactcaatccggcccctgcccgacgcccgggtctcgacgccccttacatgggac
gaggtccgcaccatccggccggaacagttcaccgtgcgcacggtgctcgagcgcttcgcg
gacgtgggcgaccctcatgccgggattgaccacgcggcgggcacactcgacggactcctc
gccttggctgccgagctcggccccgccgagaaagcgccgcgcaccggagacggctccggc
cgcaggcaatcgctgatgccgctcatcgaggtggcccggaccagatccaagcccgaggcg
ctcgcggcgctggacgagtggaagagccggcatggggacctcattcctgccctgcacacg
gccgatgtgctcgtcgacggaatgcgcggatcgagctcgctctggtaccgggtacgggtg
aacctgcagcatgtccccgaagcggagcgcccgccacaggagcagctcatcgccgactac
gacccctgggccggcaagcagtggccggggcgcccggggtag
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