Pseudovibrio sp. FO-BEG1: PSE_3855
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Entry
PSE_3855 CDS
T01669
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSE_3855 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psf03021
]
PSE_3855 (rpoA)
03400 DNA repair and recombination proteins [BR:
psf03400
]
PSE_3855 (rpoA)
Enzymes [BR:
psf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSE_3855 (rpoA)
Transcription machinery [BR:
psf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSE_3855 (rpoA)
DNA repair and recombination proteins [BR:
psf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSE_3855 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
DUF4249
TmoB
BVU_2266-like
Motif
Other DBs
NCBI-ProteinID:
AEV38359
LinkDB
All DBs
Position
complement(4191132..4192154)
Genome browser
AA seq
340 aa
AA seq
DB search
MTIQKNWQELIKPTKLDIRAGDDARFKASVIAEPLERGYGLTLGNALRRVLLSSLQGAAV
TAVQIDGVLHEFSSIPGVREDVTDIILNIKEVALRMEGEGPKRMVLRKQGPGAVYAGDIE
TVGDIEVLNPGLLLCNLDEGAEVRIEFTVNTGKGYVPAAANRPEDAPIGLIPVDSLYSPV
KKVSYKVENTREGQVLDYDKLTLTVETDGSVIPEDAVAFAARILQDQLSIFVNFEEPQRE
VQEDTVAELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRK
SLNEIKEVLAQMGLHLGMEVANWPPENIDELAKRYEDHQY
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
gtgacaattcagaaaaactggcaagagcttatcaagccaaccaaactcgacattcgtgct
ggcgatgatgcacgcttcaaagcttctgtgattgcagaaccgcttgagcgtggctacggc
ctgactcttggtaacgcactgcgccgcgttctgcttagctcccttcagggtgctgcagtg
accgcagttcagatcgatggcgttctccatgagttctcatctattcctggcgttcgtgaa
gatgtgaccgacatcatcctgaacatcaaggaggtagcgcttcgcatggaaggcgaggga
ccaaaacgtatggttctgcgtaagcagggtccaggtgcggtctacgctggtgacattgaa
actgtaggtgacattgaggttcttaacccaggtctgctgctgtgtaaccttgatgaaggt
gcggaggttcgcatcgaattcactgttaacaccggcaagggttatgttcctgctgccgct
aaccgcccagaagacgctccaatcggcctgattccggttgacagcctgtattctccggtt
aagaaggtttcttacaaggttgagaacacccgtgaaggtcaggttcttgactatgataag
ctgactttgactgtagaaactgacggatctgtgatccctgaagatgcagtagctttcgct
gctcgtatcctgcaggatcagctgtctatcttcgttaacttcgaagagccacagcgtgaa
gttcaggaagacacagttgcagaacttgcgttcaacccagcactgctgaagaaggttgat
gagctcgagttgtctgtacgttcggcaaactgcctgaagaacgacaatatcgtatatatt
ggcgatctcattcagaagacagaagcagaaatgcttcgcacaccgaacttcggtcgtaag
tctctcaacgagatcaaagaagttctggcgcagatgggtctgcatctcggtatggaagtg
gcaaactggccaccagaaaatatcgatgagctcgctaagcgctacgaagaccaccaatat
taa
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