Pseudovibrio sp. FO-BEG1: PSE_4355
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Entry
PSE_4355 CDS
T01669
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSE_4355 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psf03021
]
PSE_4355 (rpoD)
Transcription machinery [BR:
psf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSE_4355 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
YycC
EFhand_Ca_insen
Motif
Other DBs
NCBI-ProteinID:
AEV38857
UniProt:
G8PUZ4
LinkDB
All DBs
Position
complement(4718337..4720454)
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AA seq
705 aa
AA seq
DB search
MEQNMATKATQAEDTQEPAGAEGQDGPLLDLSVAAVKKMIKTAKKRGYITYDELNEVLPP
DQVSSEQIEDTMSLLSEMGINVVEAEDAEEGKEEEDAPAAVDGGELVVASSTAVTKTSTA
KEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMISGLCESPLTFQAIIIW
GEELAEGKVLLRDIIDLDATYSGPGDAGGPSDDDLSEQEEAGEGEVPEAVRQKEKEEARK
RKEEEARKANGAAAPAPAADGTQGEQTGEGGEATDDDDDEYEANVSLSVMEAELKPMVVE
IFDKITEDYKKLRKLQDQLVENKLANKTLSPSQERRYKKLKEDIIAEVKSLHLNANRIET
LVQQLYSINKMLMGYEGRLLRLADSNGVNRADFIKHYQGSELDPNWIRKVANLSGRGWKK
FVTNDGDMIRELRGEIQSLATETGLEITEFRTLVSMVQKGEREARIAKKEMVEANLRLVI
SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
TIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLQMPLEKVRKVLKIAKEPISLE
TPIGDEEDSHLGDFIEDKNAILPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMN
TDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttggagcagaatatggcgacgaaggcgacacaagctgaagatacgcaggaaccggcaggc
gcagaaggacaagatggtcctctcttggatttgtcggtcgccgccgtcaagaaaatgatc
aagaccgcaaaaaaacgcggttacatcacttatgacgaactgaatgaagttcttcctcct
gatcaggtgagctctgagcagattgaagacaccatgtcgcttctttctgaaatgggcatc
aacgttgttgaggcggaagatgcggaagagggtaaagaggaagaagatgcaccggctgct
gtagatggcggtgagctggttgttgcgtcttcaactgctgttaccaagacttccactgct
aaagaaccaaccgaccgtaccgatgatccggtgcgtatgtacctgcgcgagatgggctct
gttgagcttctttcccgtgaaggtgaaattgcgattgcaaagcgcattgaggctggccgt
gaggctatgatctctggtctttgcgaaagcccgctgaccttccaggcgattatcatctgg
ggtgaggaactggccgaaggcaaagttctgctgcgtgacattattgatctggatgcgact
tactctggtcctggtgatgcaggtggtccgtctgacgatgatctgtccgagcaggaagaa
gccggtgagggtgaagttcctgaagcggttcgccagaaggaaaaagaagaagcccgcaag
cgcaaggaagaagaagcacgcaaagccaatggtgctgctgctccagctcctgcagctgat
ggcactcagggtgagcagaccggcgaaggtggcgaagcgactgacgacgacgacgacgag
tacgaggcaaacgtttctctttccgtgatggaagcagaactgaagcctatggtcgttgag
atctttgacaagatcaccgaggactacaagaagctgcgtaagcttcaggatcagctggtt
gaaaacaagctggccaacaagaccttgtccccgtctcaggagcgtcgttacaagaagctc
aaagaagacattattgctgaagtgaagagcctgcacctcaatgcaaaccgtattgagaca
ctggttcagcagctgtactccatcaacaaaatgctgatggggtatgagggccgcctgctg
cgtcttgcagacagcaacggcgtgaaccgcgctgacttcatcaaacactatcagggttct
gaactggacccgaactggatccgcaaagttgcaaacctttctggccgtggctggaagaag
tttgtaaccaacgacggtgacatgatccgcgaactacgcggcgagattcagtcccttgcg
actgagactggcctcgagatcaccgaattccgcactctggtttccatggtgcagaagggt
gagcgcgaagcacgtatcgcgaagaaggaaatggtggaagcgaaccttcgtctcgttatc
tccattgccaaaaaatacaccaaccgtggcctgcagttcctggatctcattcaggaaggt
aacattggcctcatgaaggcggtagacaagttcgaataccgccgcggttacaagttctcc
acctatgcgacctggtggattcgtcaggcgatcacccgatccatcgcggatcaggcgcgc
accatccgtattccggtgcacatgatcgagacgatcaacaagatcgttcgtacctctcgt
cagatgcttcacgagattggccgtgagccaactccggaagagctctctgaaaagctgcag
atgccgcttgagaaggtccgtaaggtgctgaagatcgctaaggagcctatctcccttgaa
acaccgattggtgacgaggaagacagccatcttggtgacttcatcgaggataaaaatgcc
atcctgccgattgatgcggctattcaggcgaaccttcgtgagaccacgacccgcgttctg
gcgtcgctcacacctcgtgaagagcgtgttctgcgtatgcgcttcggtatcggcatgaac
accgaccacactctggaagaggttggtcagcagttctccgttacccgtgagcgtatccgt
cagattgaagcgaaagccctgcgcaagctgaagcacccaagccgctcccgcaaactgcgg
agcttcctggacagctaa
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