Pseudomonas shahriarae: HU773_025180
Help
Entry
HU773_025180 CDS
T07642
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HU773_025180 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshh03021
]
HU773_025180 (rpoB)
03400 DNA repair and recombination proteins [BR:
pshh03400
]
HU773_025180 (rpoB)
Enzymes [BR:
pshh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HU773_025180 (rpoB)
Transcription machinery [BR:
pshh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HU773_025180 (rpoB)
DNA repair and recombination proteins [BR:
pshh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HU773_025180 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QXH88895
LinkDB
All DBs
Position
complement(5606325..5610398)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET
LSLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKSLDVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRKEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtcccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgcggtgttacgtacgccgtacctttg
cgggtaaaagttcgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggcgaaatcccattgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggtaagctcctgtactccgcgcggatc
attccgtaccgtggttcgtggttggacttcgagttcgaccctaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgcgcgctcggctatacc
actgagcaagtgctggacgctttctacaccaccaacgtattcagcctgaaggatgaaacc
ctcagcctggaactgattgcttcgcgtctgcgtggtgaaattgccgtcctggacatccag
gatgagaagggcaaggtcattgttgaggctggccgtcgtattactgcgcgccacatcaac
cagatcgaaaaagccggtatcaagtcgctggacgtgcctctggactacgtcctgggccgc
actaccgccaaggttatcgttcacccggcgacaggcgagatcctggctgagtgcaacacc
gagctgaacaccgagatcctggcaaaaatcgccaaggcccaggttgttcgcatcgagacc
ctgtacaccaacgatatcgactgcggtccgttcgtctccgacaccttgaagatcgattcc
accagcaaccaattggaagcgctggtcgaaatctatcgcatgatgcgtccaggcgagcca
ccaaccaaagacgctgccgaaaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgttgcggtcctgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggccgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggctccagccagctttcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgtgtttctgcactgggcccg
ggcggtctgacccgtgagcgtgctggctttgaagttcgtgacgtacacccgacgcactac
ggtcgtgtttgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gctgcctatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgcgtggtgaaa
gacgccctggtcaccgacgagatcgtcttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaagtcctgatcgacgagctggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgta
tcgcccaagcaggtagtttcggttgcagcatcgctgatcccgttcctggaacacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaagctgtaccgaccctgcgcgct
gacaagccgctggtaggtaccggcatggaacgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactctgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgcgtaagggtgat
cgcgttcagcgtagcgacatcatggccgacggtccgtccaccgatatgggtgagttggct
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgttgttcaagaagaccgtttcaccacgatccacatccaggaa
ctgacctgtgtggcacgtgacaccaagcttgggccagaggaaatcactgcagacatcccg
aacgtgggtgaagctgcgctgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgctggcgacatcctggtcggtaaggtcactccgaaaggcgagacccaactg
actccggaagagaagctgctgcgtgccatcttcggcgaaaaagccagcgacgttaaagac
acctccctgcgcgtacctactggtaccaagggtactgtcatcgacgtacaggtcttcacc
cgtgacggcgtcgagcgtgatgctcgtgcactgtccatcgagaagactcaactcgacgaa
atccgcaaggatttgaacgaagagttccgtatcgttgaaggcgcgaccttcgaacgtctg
cgttctgccctggtaggccacaaggctgaaggcggcgcaggtctgaagaaaggtcaggat
atcaccgacgaaatcctcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggcccaggcctacatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcattcagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggctaaaggt
ctgggcgagaagatcaaccgtatgatcgaagagcagcgcaaggtcgcagacctgcgtaag
ttcctgcacgagatctacaacgagatcggcggccgcaaagaagagctggacactttctcc
gatcaggaaatcctggatctggcgaaaaacctgcgcggcggcgttccaatggctaccccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgttcgacggccgtaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
