KEGG   Pseudomonas sp. HS6: JJN09_15850
Entry
JJN09_15850       CDS       T09971                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pshs  Pseudomonas sp. HS6
Pathway
pshs02024  Quorum sensing
pshs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pshs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JJN09_15850 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    JJN09_15850 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pshs03019]
    JJN09_15850 (hfq)
   03036 Chromosome and associated proteins [BR:pshs03036]
    JJN09_15850 (hfq)
Messenger RNA biogenesis [BR:pshs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     JJN09_15850 (hfq)
Chromosome and associated proteins [BR:pshs03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    JJN09_15850 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UQS12705
LinkDB
Position
complement(3507186..3507446)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATESEAGDAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaatactttacgtaaagagaaagtt
ggggtttccatctacctggtcaacggtatcaaactgcaaggtacgatcgagtcgttcgac
cagttcgttatcctgctgaagaacaccgtcagccagatggtttacaaacacgctatctct
acagtcgtgccggttcgtccaattcgtctgccaagcgcaaccgaatccgaagcaggtgac
gctgagccaggtaacgcctga

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