Pseudomonas sp. HS6: JJN09_15850
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Entry
JJN09_15850 CDS
T09971
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs02024
Quorum sensing
pshs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJN09_15850 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JJN09_15850 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshs03019
]
JJN09_15850 (hfq)
03036 Chromosome and associated proteins [BR:
pshs03036
]
JJN09_15850 (hfq)
Messenger RNA biogenesis [BR:
pshs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
JJN09_15850 (hfq)
Chromosome and associated proteins [BR:
pshs03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
JJN09_15850 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
UQS12705
LinkDB
All DBs
Position
complement(3507186..3507446)
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AA seq
86 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATESEAGDAEPGNA
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacttgaatactttacgtaaagagaaagtt
ggggtttccatctacctggtcaacggtatcaaactgcaaggtacgatcgagtcgttcgac
cagttcgttatcctgctgaagaacaccgtcagccagatggtttacaaacacgctatctct
acagtcgtgccggttcgtccaattcgtctgccaagcgcaaccgaatccgaagcaggtgac
gctgagccaggtaacgcctga
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