KEGG   Pseudomonas siliginis: NF676_03300
Entry
NF676_03300       CDS       T08569                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
psii  Pseudomonas siliginis
Pathway
psii02024  Quorum sensing
psii03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psii00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NF676_03300 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NF676_03300 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psii03019]
    NF676_03300 (hfq)
   03036 Chromosome and associated proteins [BR:psii03036]
    NF676_03300 (hfq)
Messenger RNA biogenesis [BR:psii03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     NF676_03300 (hfq)
Chromosome and associated proteins [BR:psii03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    NF676_03300 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UST80363
LinkDB
Position
625625..625891
AA seq 88 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATENEQGDADAAPGNA
NT seq 267 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacctgaacactttacgtaaagagaaagtc
ggggtttccatctatctggtcaacggtatcaagctgcaagggacgatcgagtcgttcgac
cagttcgtgatcctgctgaaaaacaccgtaagccagatggtctacaaacacgctatctcg
accgtcgtgccggttcgtccaattcgtctgcctagcgcaaccgaaaacgaacagggcgat
gccgatgcagcgccgggtaacgcctga

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