Pseudomonas silesiensis: PMA3_27285
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Entry
PMA3_27285 CDS
T05412
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psil
Pseudomonas silesiensis
Pathway
psil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PMA3_27285 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psil03021
]
PMA3_27285 (rpoB)
03400 DNA repair and recombination proteins [BR:
psil03400
]
PMA3_27285 (rpoB)
Enzymes [BR:
psil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PMA3_27285 (rpoB)
Transcription machinery [BR:
psil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PMA3_27285 (rpoB)
DNA repair and recombination proteins [BR:
psil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PMA3_27285 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ANJ58663
UniProt:
A0A191Z114
LinkDB
All DBs
Position
complement(6151215..6155288)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHLSGET
LSLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGLKTLEVPLDYVLGR
TTAKAIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEDLDSFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatctcctggcaatccagctggattcgtatcgtgaattcttgcag
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaacttacgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgaaaacggtaccttc
gtaatcaacggtaccgagcgagtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcatagctccggcaaactgctgtactccgcgcgcatc
attccttaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggtactgctgcgcgcgctcggctatacc
actgaagaagtgctcgacgcgttctacaccaccaacgttttccacctgagcggcgaaacc
ctcagtctggaactgattgcttcgcgtctgcgtggtgaaatcgctgttcttgatattcag
gacgagaagggcaaggtcatcgttgaggctggtcgccgtattactgcgcgccacatcaac
cagatcgaaaaagccggtctcaagaccctggaagtgcctctggactacgtcctgggtcgc
actaccgccaaggccatcgtgcatccggcaaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcaaaaatcgccaaggcccaggttgttcgcatcgagact
ctgtacaccaacgatatcgactgcggtccgttcgtctccgacaccctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgttgtgcaaagaagacatcgtcgcggtactgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctttcccagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtgtctgcactcggccct
ggcggtttgacccgtgagcgtgccggctttgaagtgcgtgacgtacacccgactcactac
ggtcgtgtatgcccgatcgaaacgccggaaggtccgaacatcggcctgatcaactccctg
gctgcctatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgtgtggtgaaa
gacgctctggtcaccgacgagatcgtgttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaggtcctgatcgacgaactggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgta
tcgccgaagcaggtagtttcggttgcagcgtcgctgatcccgttcctcgagcacgatgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtacctaccctgcgcgct
gacaagccgctggtcggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactccgtcgacgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaaccggtgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgcgtaaaggtgat
cgggttcagcgcagcgacatcatggccgacggcccgtccaccgacatgggtgaactggcg
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacattcaggaa
ctgacctgtgtggcgcgtgacaccaagcttgggccagaggaaatcactgccgacatcccg
aacgtgggtgaagcggcactgaacaagctggacgaagccggtatcgtttacgtaggtgcc
gaagtaggcgcaggcgacatcctggtcggcaaggtcactccgaaaggcgagacccaactg
actccggaagaaaaactgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtgcctaccggcaccaagggtactgtcatcgacgtacaggtcttcacc
cgcgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagactcaactcgacgag
atccgcaaggatctgaacgaagagttccgtatcgttgaaggcgcgaccttcgaacgtctg
cgttccgctctggtcggccacaaagccgaaggcggcgccggcctgaagaaaggtcaggac
atcaccgacgaagtgctcgacggtcttgagcatggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacttgggcctcgcggccaaaggc
ctgggcgagaagatcaaccgcatgatcgaggagcaacgtaaagttgccgatctgcgcaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagatctggacagcttctcc
gaccaggaaatcctggatctggcgaagaacctgcgtggcggcgttccaatggccactcca
gtattcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcggacctgcca
gaaagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgcccggtg
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccgtaccaagatgtac
aaaaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
