Phocoena sinus (vaquita): 116746030
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Entry
116746030 CDS
T07759
Symbol
DHX58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58 isoform X1
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
116746030 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
psiu04054
]
116746030 (DHX58)
Pattern recognition receptors [BR:
psiu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
116746030 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
zf-TRAF_2
Motif
Other DBs
NCBI-GeneID:
116746030
NCBI-ProteinID:
XP_032473115
Ensembl:
ENSPSNG00000015781
LinkDB
All DBs
Position
20:complement(39247568..39256796)
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AA seq
680 aa
AA seq
DB search
MELRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYLAKRHLETVDGAKVVVLVNRVHLV
TQHCEEFSSMLGKRWAITTLSGDMGPRAGFGHVARRHDLLICTAELLQKALTSLEEGEHV
ELNAFSLLVVDECHHTHKDTVYNVILSRYLELKLRRTRPLPQVLGLTASPGTGGASTLDG
AIDHILQLCANLDTWRIMSPQDYRSQLLHSRQPCKQYDLCHRRTQDPFGDMLKELMDQIH
DHLEMPELRRDFGTQTYEQQVVELSRDAAEAGLQERRVYALHLRRYNDALLIHDTVRAVD
ALATLQDFYDRERTAKTQILRAERWLLALFDDHKNKLAHLATRGPENPKLEVLEEILKKQ
FRSPDSPQGIIFTRTRQSAHSLLLWLQQQPGLQTVAIRPQLLIGAGNSSQRAQMIPMTQR
DQQEVVQKFRTGTLNLLVATSVAEEGLDIPQCKVVVRYGLLTNEISMVQARGRARASQSV
YSFVAAQGSRELKRELTNEALETLMERAVAAVQEMDQAKYQDKIQALQRAALVKRAAQAA
QRESHQHKFLAEHVRLLCVNCTVPVGYGSDLRRVEGTHHVNVNPNFLIYCNISQEPVVIN
RVFKDWRPGGVISCRNCGEGWGLQMIYKSVKLPVLKVRSLLLETPQGRVQSKKWSRVPFT
VPDFDYVQQCAQHLADFSLD
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgaccctaccagtgggaggtgatcatgcctgccctggagggcaagaatatc
atcatttggctgcccacgggctccgggaagaccagggcagctgcttatttggccaagagg
catctagagacagtagacggagccaaggtggttgtattggtcaacagggtgcacctggtg
acccagcattgtgaggagttcagcagcatgctgggcaagcgctgggccattacaaccctg
agtggggacatggggccacgagcgggctttggccacgtggcccggaggcacgacctgctc
atctgcacggctgagctgctgcagaaggcactgaccagcctggaggagggggagcatgtg
gagctcaacgccttctccctgctggtggtggatgagtgtcaccacacgcacaaagacacc
gtgtacaacgtcatcctgagccggtacctggagcttaaactccggaggacccggccgctg
ccgcaggtgctgggtctcacagcctcgccgggcactggcggggcctccacgctcgatggg
gccattgaccacatcctgcagctctgtgccaacctggacacgtggcgcatcatgtcaccc
caggactaccgctcccagctgctgcacagccgccagccctgcaaacagtacgacctctgc
cacagacgcacccaggatccgtttggcgacatgctgaaggagctcatggaccaaatccac
gaccatctggagatgcccgagttgagacgggacttcgggacgcagacctacgagcaacaa
gtggtggagctgagccgggatgcggctgaggcggggctccaggagcggcgggtgtacgcg
cttcacctgcgtcgctacaacgacgcactgctcatccacgacacggtccgtgcggtggat
gccctggccactctgcaggatttctacgacagggagcgcaccgctaagacccagatcctg
cgtgccgagcgctggctgctggcgctgtttgatgaccacaagaataagctggcccacctg
gcaactcgtggcccagagaacccgaaactggaggtgctggaagagatcctgaagaagcag
ttcaggagccctgacagcccccagggcatcatcttcacccggacccgccagagcgctcac
tccctcctgctctggctccagcagcagccaggcctgcagacagtggccatcaggccccag
ctgttgattggggctgggaacagcagccagcgcgctcagatgatcccgatgacccagagg
gaccagcaagaagtggtccagaagttccggactggtaccctgaacctcctggtggctacg
agtgtggcagaggaggggctggacatcccccagtgcaaggtggtggtgcgctatgggctc
ctgaccaatgagatctccatggtccaggcaaggggccgtgcccgggccagccaaagtgta
tactcatttgtggcggcccaaggtagtcgggagctgaagcgggagctgaccaatgaggcg
ctagagactctgatggaacgggcagtagctgctgtgcaggagatggaccaggccaagtac
caggacaagatccaggctctgcagcgggcagccttggtcaagcgggcagcccaggcggcc
cagcgggagagtcaccagcacaagttcctggcagagcacgtgcggctcctctgtgtcaac
tgcacggtgcccgtgggctatgggagtgacctacggagggtggagggtacccaccacgtc
aatgtgaaccccaacttcttgatctactgcaacatctcccaggagcctgtggtcatcaac
agagtcttcaaggactggaggcctggaggtgtcattagctgcaggaactgcggggagggc
tggggtctgcagatgatctacaagtcggtgaagctgccagtactcaaagtccgcagcttg
ctgctggagacaccgcaagggcgggtccagtccaagaagtggtcccgcgtgcccttcacc
gtgcctgactttgactacgtgcagcagtgtgcccagcacctggccgacttctccctggac
tga
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