Phocoena sinus (vaquita): 116748890
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Entry
116748890 CDS
T07759
Symbol
ABCD4
Name
(RefSeq) ATP-binding cassette sub-family D member 4 isoform X1
KO
K05678
ATP-binding cassette, subfamily D (ALD), member 4 [EC:
7.6.2.8
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu02010
ABC transporters
psiu04146
Peroxisome
psiu04977
Vitamin digestion and absorption
psiu04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
116748890 (ABCD4)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
116748890 (ABCD4)
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
116748890 (ABCD4)
04980 Cobalamin transport and metabolism
116748890 (ABCD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116748890 (ABCD4)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
psiu02000
]
116748890 (ABCD4)
Enzymes [BR:
psiu01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.8 ABC-type vitamin B12 transporter
116748890 (ABCD4)
Membrane trafficking [BR:
psiu04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
116748890 (ABCD4)
Transporters [BR:
psiu02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD4 subgroup
116748890 (ABCD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_16
AAA_22
AAA_30
SbmA_BacA
AAA_29
nSTAND3
IRK
AAA_23
AAA_7
T2SSE
AAA_25
CoV_E
Motif
Other DBs
NCBI-GeneID:
116748890
NCBI-ProteinID:
XP_032478383
Ensembl:
ENSPSNG00000017443
LinkDB
All DBs
Position
2:complement(149920400..149944898)
Genome browser
AA seq
616 aa
AA seq
DB search
MAVRGPAPRAGARTLLLLLLFFRPRLDLQFFQRFLQIQKVLFPSWSSQNALMFLTLLCVA
LLEQLVIYRVGLIPSQYFGVLGNKDLNGFKTLTFLAVVLIVLNSMLKSFDQFTCNLLYVS
WRKDLTEHLHRLYFRGRMYYTLNVLRDDIDNPDQRISQDVERFCRQLSSVASKLIVSPFT
LIYYTYQCFQSTGWLGPVSIFGYFILGTVVNKMLMGPIVAKLVQQEKLEGDFRFKHMQIR
VHAEPAAFFRAGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGVNMFDYLGSILSYVVIS
IPIFSGVYRDLSPTELSTLVSKNAFVCMYVISCFTRLIDLSTTLSDVAGYTHRIGELQET
LLDMTLKSRDGEILDESEWDLARAPGWPATERTDTAFLLERVCISAPSSNKPLIKDLSLK
ISEGQSLLITGNTGTGKTSLLRVLGGLWASTWGSVQMLMDFGPHGVLFLPQKPFFTDGTL
REQVIYPLKEIYPDSGSADDERIMRFLELAGLSSLVARTEGLDQQVDWNWYDVLSPGEMQ
RLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFVSVGHRRSLEKFHSLVL
KLCGEGRWELTRIKVE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcggtccgggggcccgcgccccgggctggcgcccggactctgcttctcctgcttctc
ttcttcaggcccaggttagatctgcaatttttccagcggttcctgcagatacagaaggtt
ttgtttccctcttggtcatcacagaatgccttgatgttcctgacccttttgtgtgtggcc
ctactggaacaactggtgatctaccgggttggcttgattcccagtcagtactttggggtc
ctaggaaacaaagatttaaatgggtttaagaccctgacgttcctggctgttgtgctcatc
gtcctcaactccatgctgaagagctttgaccagttcacctgcaacctgctgtatgtgagc
tggaggaaggacctcaccgagcatctccaccgcctctacttccggggccgcatgtactac
accctcaacgtgctgcgggatgacatcgataacccggaccagcgcatcagccaggacgtg
gagcggttctgccggcagctcagcagcgtggccagcaagctgattgtctcccccttcacc
ctcatctactacacctatcagtgcttccagagcaccggctggctcgggcctgtgagcatc
tttgggtatttcattctgggaaccgtggtgaacaagatgttgatgggtcccattgtggca
aaactggtgcagcaggagaagctggagggggatttcaggttcaagcacatgcagatccgg
gtgcatgctgagcctgctgcttttttcagagctgggcacgtggagcacatgaggacagac
cgcaggctgcagagactccttcagacccagagggagctgatgtccaaggagctctggctg
tacatcggcgtcaacatgtttgactatctgggcagcatcctgagttacgtcgtgatctca
atccccattttcagcggcgtctacagagacctgagccccacagagctcagcaccctggtc
agcaagaacgcctttgtatgcatgtacgtcatcagctgcttcacccggctcatcgatctc
tccaccacgctctccgatgtggcaggctacacacacaggatcggggaacttcaggagacc
ctgctggacatgaccctgaagtcacgggatggggagatcctggacgagagcgagtgggac
ttggccagggccccgggatggccagcaacagagcgaacagatacagcttttctccttgag
cgggtctgcatctccgccccctcctctaacaaacccttaatcaaggatctgagcctgaag
atctctgaggggcagagcttgcttatcacaggcaacacgggcaccggcaagacctccttg
ctccgggttctgggtggcctctgggcgagcacatggggctcagtgcagatgctcatggac
tttggaccccacggggtgctgttcctgccacaaaagccatttttcactgacgggaccctt
cgggagcaggtgatatatcccctgaaggagatctacccggactcaggttctgctgatgat
gagaggatcatgaggttcctggagttggcaggcctgtccagcttggtggcaaggacagag
ggtctggaccagcaggtcgattggaactggtatgatgttctatccccaggagagatgcag
aggctctcctttgcccggctcttctacctgcagccgaagtatgcagtgcttgatgaagcc
accagtgccctgactgaggaggtggagagcgagctctaccgcatcggccagcagctgggc
atgacgttcgtcagcgtgggccatcggcgcagccttgagaagtttcactccttggttctg
aaactctgtggagaaggaaggtgggagctgaccagaatcaaagtggaatga
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