Phocoena sinus (vaquita): 116752960
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Entry
116752960 CDS
T07759
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03008
Ribosome biogenesis in eukaryotes
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116752960 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
116752960 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116752960 (XRN1)
03009 Ribosome biogenesis [BR:
psiu03009
]
116752960 (XRN1)
03016 Transfer RNA biogenesis [BR:
psiu03016
]
116752960 (XRN1)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116752960 (XRN1)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116752960 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
116752960 (XRN1)
Ribosome biogenesis [BR:
psiu03009
]
Eukaryotic type
Pre-60S particles
RNases
116752960 (XRN1)
Transfer RNA biogenesis [BR:
psiu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
116752960 (XRN1)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116752960 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
116752960
NCBI-ProteinID:
XP_032486099
Ensembl:
ENSPSNG00000008771
LinkDB
All DBs
Position
4:complement(22955420..23057437)
Genome browser
AA seq
1704 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNYKEKKKSKGQENSICWAALDKNGEEVVTSKDNLEDEI
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWF
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTNEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWYDSETEFTYPSPWPEKFPAIGRCCARYRIISLDAWRVDISKNKITRVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNTESDELSVENIASSVLGKSLFVNWP
HLEEARVVGVSDGETKFYLEEPAGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISEY
YLRRKGIIINETSAVIYGQLLTGRKYQVNQNGEVRLEKQWSKQVLPFVYQTIVQDIRAFD
SRFSNIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVNHYSS
SSSISSGHLGGLNHSPQSLFVPTQVPAKDDDEFCNIWQSLQGSGKVQHFQPPLQEKGAVL
PQEISQVTQHHKSGFNENSVKQRKHEPHRKFKEECKSPKTESRSQKISNRQPNPGIENFL
ASLNISKENEVQSSHHEEPPSEEHLSPQSFAMKGTRMLKEILKIDGSDTVDHKNEMKQFG
NEVTVSSNRRDEYGSSSQPKQSKKLTSYMNKPHSASEYHNVQSVDSVCWPAASQIPAVST
PVTELSRICSLVGMPQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFA
LQQLGSLGVNFPLPPPIFPSYPPAVPPGTIPPVFPQPTGWDHYGSNLALGAANIMPSSSH
LFGSMPWAPPVPVPGKPFHHTSYAGTMPMAGGMPAGVHSQFIPLQVTKKRVANKKNFENK
DAQSCQATLLQTSQSASSDVTKVIPQESLSASLKSPQITQLASPFQVEAASAGHSMSHHK
STPSSSRRKSRKLAVNFGVSKPSE
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttatcgatggatctcggagcggtatccctgcctcagcgaagtg
gtgaaggagcatcagattcctgaatttgataacttatacctggatatgaatggtattata
catcaatgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcattattaaacctaggaaagtg
ttcttcatggccgttgacggtgtggctcctcgagcaaagatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcaatagaaaaaggagaa
actcttcctacagaggccagatttgattccaactgcattacaccaggaactgaattcatg
gccaggttacacgaacatctgaagtattttgtaaatatgaaaatttctacagacaagtcg
tggcaaggagttaccatctatttctcaggccatgagactcctggagaaggagaacataaa
atcatggaatttatcagatccgagaaggcaaagccagatcatgatccaaacaccagacac
tgtctttatggcttagatgctgacttgattatgcttggattaacaagtcatgaagcacat
ttctctcttttaagagaagaggttcggtttggtggcaaaaagacacaaagggtatgcgca
ccagaagaaaccacatttcaccttctacacttgtctttaatgagagagtatattgactat
gagttttcagcattaaaagacaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttgggggttatattaatgaaagtggacatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgagagcacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgtcgccgcagaagaa
gccaagaactacaaggaaaagaaaaaatcaaagggccaggaaaactcaatatgttgggct
gctttagacaaaaatggagaagaagtggtaacttctaaggacaatttggaagatgagatt
gaagatgatgacttgtttgaaaccgagtttagacaatataaaagaacatattacatgaca
aagatgggagttgacgtagtttctgatgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcattattactatcatggagttcagtcctggagctggttt
tatccgtaccattatgcacctttcctatctgatatccgcaacatcagtacactcaaaatc
cattttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttccagca
gctagcaaaaatttacttcctacatgctaccagcatttgatgacgaatgaagactcgcca
attatagaatattatccacctgattttaaaactgacctaaatgggaagcaacaggaatgg
gaagctgtggttctaatacctttcattgatgagaagcgattgttggaagccatggagaca
tgcaaccactccctgaaaaaagaagagaggaaaagaaaccaacatagtgagtgcctaatg
tgctggtatgatagcgagacagagttcacgtacccctctccatggccagaaaagttccct
gccataggacgatgctgcgcaaggtatagaataatatcattagatgcttggcgtgtagac
ataagcaaaaacaaaataaccagggttgaccaaaaggcattatatttctgtggatttcct
actttgaaacacatcaaacacaaattttttttgaagaaaagtggggttcaagtattccag
caaagcagtcgtggagaaaacatgatgttggaaatattagtgaatacagaatcagatgaa
cttagtgtagaaaatatagcttcatcagtgcttgggaagtctctctttgttaattggcct
catcttgaagaagctagagttgttggtgtatcagatggagaaactaagttttacttggaa
gaacctgcaggaacacagaagctttatttgggaagaactgcaccaccctctaaagtggtc
catcttggagacaaagaacaatctaactggacaaaagaagtacaaggaatttcagaatac
tacctgagaagaaaaggaataataataaatgaaacatctgcagttatatatggtcagtta
ctcacaggtcgtaaatatcaagtaaatcaaaatggtgaagtccgtctagagaaacagtgg
tcaaaacaagttcttccatttgtttatcaaactattgtccaagacatccgagcttttgac
tcccgtttctctaatattaaaacattggatgacttgtttcctcctagaagtatggtcttt
atgctgggaacaccctattatggatgcactggagaagttcaggattcaggggatgtgatt
acagaaggcaggattcgtgtggttttcagtattccatgtgaacccaatcttgatgcttta
atacaaaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaac
aaaaaaaatgaggaggtacctggatatactaagaaagttggaagtgaatggatgtattca
tctgcagcagaacagcttcttgcagagtacttggagagagctccagaactgtttagttat
atagccaaaaatagccaagaggatgtgttctatgaagacgacatttggcctggagaaaat
gagaacggtgctgagaaagttcaagaaattattacttggctaaagggacatcctgtcagt
actttgtctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaagaagaagttgaaaagtgcaagcaaagaaagaataataagaaggttcgagtgacagtg
aagccccatttgctatacagacctttagaacagcaacatggagtcattcctgatcgggat
gcagagtttcgtctctttgaccgagttgtaaatgtgagagagaacttttccgttccagtt
ggccttcggggcaccatcataggaattaaaggggctaatagagaagctgatgtactattt
gaagtgttatttgatgaagaatttcctggaggtttaacaataaggtgctcacctggtaga
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaaca
ggaaatcagaagttgacagccattgtgaaaccacagccagctgtgaatcactatagctca
agttcatcaatttcatctgggcatttgggaggtctgaaccattcccctcaatcacttttt
gttcctactcaagtacctgctaaagatgatgatgaattttgcaacatttggcaatcctta
cagggatctggaaaggttcaacactttcagccacctctacaagagaagggtgcagttcta
cctcaagaaataagtcaagtaactcaacatcacaaatctggctttaatgagaacagtgtt
aagcaaagaaaacatgagcctcacagaaaatttaaagaagagtgtaagagtcctaaaact
gagagtcggtcacaaaaaatatcaaataggcagcctaatcctggaattgagaacttctta
gcatccttgaatatctccaaagaaaatgaagtacagtcatctcatcatgaagagcctcca
agcgaagaacatttgtcaccacagtcatttgctatgaagggaactcggatgcttaaagaa
attctaaaaattgatggctctgacactgtggaccataagaatgagatgaaacaatttggt
aatgaagtcactgtttcctccaatagaagagatgaatatggatcttcctcacagcctaaa
caaagtaagaaattaacatcttatatgaacaagcctcacagtgctagtgagtaccataat
gttcagtctgtggacagtgtgtgctggcctgctgccagccagattcctgctgtgtccaca
ccagtaactgaactttctcgaatttgttcccttgttggaatgccacaaccagatttctcc
tttctgagaacaccacagacaatgacagtttgccaggtaaaattatctaatggcttactg
gtacatgggccacagtgccattctgaaaatgaagccaaggaaaaagctgcactttttgct
ttacaacaattgggctccttaggagtgaatttccctttgcctccaccaatatttccaagt
tatcctcctgctgtaccacctggaaccattcctccagtttttccccaacctactggctgg
gatcactatggaagcaacttagcattgggggcagctaatataatgccctcatcatctcat
ctctttggctcaatgccatgggcaccaccagtgccagttcctgggaagcccttccatcat
acttcatatgctgggaccatgcccatggctggaggaatgccagctggtgtgcacagtcag
ttcatacctctacaggtaactaaaaaaagggttgcaaacaaaaagaattttgagaacaag
gatgcccagagttgtcaagccaccctacttcagactagccagtcagcatcttctgatgtc
accaaagtgattccacaggagagtttatcagcttccttaaagtcccctcagattactcaa
cttgcgtctccttttcaagttgaagctgcctctgcaggccatagtatgtctcaccataag
tcaacaccaagctcctcaagaagaaaatcaagaaaactggctgtcaattttggagtttct
aaaccttctgaataa
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integrated database retrieval system
