Phocoena sinus (vaquita): 116754506
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Entry
116754506 CDS
T07759
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116754506 (COL25A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
psiu00536
]
116754506 (COL25A1)
Glycosaminoglycan binding proteins [BR:
psiu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116754506 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116754506
NCBI-ProteinID:
XP_032489082
Ensembl:
ENSPSNG00000006689
LinkDB
All DBs
Position
5:30848598..31326919
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AA seq
657 aa
AA seq
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MLVKKQAGKGGGREPGSEDRSPAGQRCARTVSPCAALTALLSVVAVISCLYLGVKTNDLQ
ARIAALESAKGDPSIRLLPDCLDQLKAMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
PAGPPGKRGKRGRRGESGPPGQPGPEGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
SPGQKGSVGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGQPGERGEKGDAGENGPKGDTG
EKGDPGSSAAGVKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
KGDRGEAGHPGRGDRGEPGAPGPKGKQGESGTRGPKGSKGDRGDKGDSGALGPRGPPGQK
GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEPGSPGVPGVDGEQGL
KGSKGDMGDPGMPGEKGGIGLPGLPGANGMKGEKGDSGLPGPQGPSIIGPPGPPGPHGPP
GPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFP
GPRGEKGDLGEKGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaagaagcaagcagggaaaggaggggggcgggagccgggctccgaggaccgg
agcccagccgggcagcgttgtgcccggaccgtgtccccgtgcgccgccctgaccgccctc
ctgtcagtagtggccgtgatatcttgtctgtacctgggggtgaaaaccaacgacctccag
gcgaggatcgccgccctcgaatccgccaaaggagacccttccatccgtctgctgcctgat
tgtctggatcagctcaaagcaatggtgcaggagaaagtggagcgacttctggctcagaaa
tcctatgaacatatggctaaaataagaatcgcaagagaagcaccttcagagtgcaactgc
ccagcaggccctccggggaaacgaggtaaaaggggccgaagaggagaatctggtcctcct
ggtcagcctggtcctgagggccctcctggtccaaaaggtgataagggagaacagggtgat
cagggacctcggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcag
ctcattaaacgccgcctcattaagggtgaccaaggacaggctgggcctccaggccctcca
ggacctccaggcccacgagggcctcctggggacacagggaaagatggcccccgcggaatg
ccaggagtgcctggtgaaccagggaaaccgggagaacaaggcttgatgggtcctctgggg
tctccaggacaaaagggttctgttggagcacctggaattccagggatgaatgggcaaaag
ggtgaacccgggttgcctggagcagtaggacagaatggaataccagggccaaagggacaa
cctggagaacgaggagaaaagggagatgctggagagaatggccccaaaggtgatacaggt
gaaaagggtgaccctggatcgtccgctgcaggagttaagggagagcccggagaatctggt
cgtccagggcaaaagggtgaaccagggcttcctgggcttcctggacttccggggataaag
ggagaaccaggtttcattggtcctcaaggagaaccaggcttaccagggttaccaggaaca
aagggcgaccgtggggaggcagggcatcctggaagaggggatcgaggggagcctggagcc
cctggaccaaaggggaaacaaggtgaatcaggaactagaggcccaaaggggtctaagggt
gaccgtggagacaaaggggactctggagccctgggaccaaggggtccacctggtcaaaag
ggagatcaaggagccaccgagatcatagactacaacggcaacctccacgaagccttgcag
aggattaccaccttaacagtcacgggtccccctggaccacctggacctcaaggactacaa
gggccaaagggagagccaggatctccaggagtcccaggagttgatggagagcagggactc
aaaggttcaaagggagacatgggggacccaggtatgccaggtgaaaaaggaggaattgga
cttcctggattaccgggtgccaatggaatgaaaggagaaaaaggagactcgggattgcca
ggtcctcagggtccttccatcataggcccaccaggcccaccaggtccccatggcccacca
ggccccatgggaccccatggacttcctggaccaaagggtacagatggccctatgggaccc
catggccccgcaggtcccaaaggagaaagaggtgaaaaaggagctatgggagagccggga
ccccgaggaccgtatggtcttcccgggaaagatggagagcctggtcttgatggattccct
ggtccacgaggcgagaagggtgatctaggagaaaagggggaaaagggggaaaagggaaag
aaaggcaaaaaggggcctaaaggggagaaaggagaacagggtgctcctggattagatgca
ccctgcccgttggggccagatggattacccatgcccggctgttggcaaaagtga
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