Phocoena sinus (vaquita): 116756881
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Entry
116756881 CDS
T07759
Symbol
SCN2A
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
116756881 (SCN2A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116756881 (SCN2A)
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116756881 (SCN2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
IQ
IQCJ-SCHIP1
Motif
Other DBs
NCBI-GeneID:
116756881
NCBI-ProteinID:
XP_032493827
Ensembl:
ENSPSNG00000001691
LinkDB
All DBs
Position
7:complement(67495686..67590010)
Genome browser
AA seq
2006 aa
AA seq
DB search
MAQSVLVPPGPDSFRFFTRESLAAIEQRIAEEKAKRPKQERKDEDDENGPKPNSDLEAGK
SLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAISRFSATPALYILTPFNPIRK
LAIKILVHSLFNVLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSSFEINITSFFNNSL
DGNGTTFNRTVSMFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAESRDVSGAGGI
GVFSESSSAASKLSSKSEKELKNRRKKKKQKEQSGEEEKEDGVPKSESEDSIRRKGFRFS
LEGSRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRASLFSFRGRAKDIGSENDFADDEHST
FEDNDSRRDSLFVPHRHGERRPSNVSQASRASRVLPVLPMNGKMHSAVDCNGVVSLVGGP
SALTSPAGQLLPEGTTTETEIRKRRSSSYHVSMDLLEDPTAKQRATSMASILTNTMEELE
ESRQKCPPCWYKFANMCLIWDCCKPWLKVKHLVNLVVMDPFVDLAITICIVLNTLFMAME
HYPMTEQFSSVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGLIVSLSLMELG
LANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMC
LTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDYVKR
KIREFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTTIEIGKDLNYLKDGNGTTSGIG
SSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDMEESKEKLNATS
SSEGSTVDIGAPAEGEQPEVEPEESLEPEACFTEDCVRKFKCCQISIEEGKGKLWWNLRK
TCYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLL
KWVAYGFQVYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSR
FEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINYTTGEMFDVSV
VNNYSECKALIESNQTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVEL
QPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYN
AMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETDDQSQEM
TNILYWINLVFIVLFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMFLAELIEKYF
VSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGM
SNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKDHPG
SSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFY
EVWEKFDPDATQFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILF
AFTKRVLGESGEMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIVIQRAYRRY
LLKQKVKKVSCIYKKDKGKEGDGTPIKEDILTDKLNENSTPEKTDVTPSTTSPPSYDSVT
KPEKEKFEKDKSEKEDKGKDIRESKK
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatcagtgctggtaccgccaggacctgacagcttccgcttctttaccagggaa
tcccttgctgctattgagcaacgcattgcagaagagaaagctaagagacccaaacaagaa
cgcaaggatgaagatgatgaaaatggcccaaagccaaatagtgacttggaagcaggaaaa
tcccttccatttatttatggagacattcctccagagatggtgtcagagcccctggaggac
ctggacccctactatatcaataagaaaacgtttatagtattgaataaagggaaagcaatc
tctcgattcagtgccacccctgccctgtacattttaactcccttcaaccctattagaaaa
ttagctattaagattttggtacattctttattcaatgtgctcattatgtgcactattctt
accaactgtgtatttatgaccatgagtaatcctccagactggacaaagaatgtggagtac
acctttacaggaatttacacttttgaatcacttataaaaatacttgcaaggggcttttgt
ttagaagatttcacatttctacgggatccgtggaattggttggatttcacagtcattact
tttgcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagcactgaaaacaatttcagtcattccaggcctgaagaccatcgtgggcgcc
ctaatccagtcagtgaagaagctctcagatgtaatgatcctgactgtgttctgtctgagc
gtgtttgcactaataggattacagctgtttatgggcaacctgcgaaacaaatgtttgcaa
tggcccccagataattcttcctttgaaataaacatcacttccttctttaataactcattg
gatgggaatggtaccactttcaataggacagtgagcatgtttaactgggatgaatatatt
gaagataaaagtcacttctattttttggaagggcaaaatgatgctctgctttgtggcaac
agctcagatgcaggccagtgtccagaaggatacatctgtgtgaaggctggtagaaacccc
aactatggctacacaagcttcgacacctttagctgggctttcttgtccttatttcgtctt
atgactcaagacttctgggaaaacctttatcaactgacattacgtgctgctgggaaaaca
tacatgatattttttgtgctggtcattttcttgggctcattctatcttataaatttaatc
ctggctgtggtggccatggcctatgaggaacagaatcaggcaacgctggaagaggctgaa
cagaaggaagctgaatttcagcagatgcttgaacaattaaaaaagcaacaagaagaagct
caggcagcagcggcagcagcatctgctgaatcaagagacgtcagtggtgctggtgggata
ggggttttctcagaaagttcttcagcagcatcaaagttgagctccaagagtgaaaaagag
ctgaaaaacagacggaagaaaaagaaacagaaagaacagtctggagaagaagagaaggaa
gatggggtccccaaatctgaatctgaagacagcataagaagaaaaggtttccgtttttcc
ttagaaggaagcaggctgacatatgaaaagaggttttcctctccacaccagtctttattg
agcatccgtggctcccttttctctccaagacgcaacagtagggcgagccttttcagcttc
agaggtcgagccaaggatattggctctgagaatgactttgccgatgatgagcacagcacc
ttcgaagacaatgacagcagaagagactctctgtttgtgccgcacagacacggggagcgg
cgccccagcaacgtcagccaggccagccgcgcctccagggtgctccccgttctgcccatg
aacgggaagatgcacagtgctgtggattgcaacggcgtggtctccctggtcgggggccct
tctgccctcacatctcctgctggacagctcctgccagagggcacgactactgaaacggaa
ataagaaagagacggtccagttcttatcatgtttccatggatctgttggaagatcctaca
gcaaagcaaagagcaacgagtatggctagtattttgaccaacaccatggaagaacttgaa
gaatccagacagaaatgcccaccctgctggtataaatttgctaacatgtgtttgatttgg
gactgctgtaagccatggttaaaggtgaaacatctcgtcaacttggttgtgatggaccct
tttgttgacctggccatcaccatctgcattgtcttaaataccctcttcatggccatggag
cactatcccatgacggagcagtttagcagtgtgctgtcagtcgggaacctggtcttcact
gggatcttcacagcagaaatgtttctaaagataattgccatggatccatattattacttt
caagaaggctggaatatttttgatggtttaattgtgagccttagtttaatggaacttggt
ttggcaaacgtggaaggattgtcagttctccgatcatttcgactgctcagagttttcaaa
ttggcaaaatcttggccgactctgaacatgctgataaagatcattggcaattcagtgggg
gctctgggtaacctcaccttggtgttggccatcatcgtcttcatttttgccgtggtcggc
atgcagctctttggtaagagctacaaagaatgtgtctgcaagatttccaatgattgtgaa
ctcccgcgctggcacatgcatgacttcttccactccttcctgattgtgttccgagtgctg
tgtggagagtggatagagaccatgtgggactgcatggaggtcgccggtcaaaccatgtgc
cttactgtcttcatgatggtcatggtcattggaaacctggtggttctgaacctcttcctg
gccttactcttgagttcattcagttctgacaatcttgccgccactgatgatgataatgaa
atgaataatctccagattgctgtgggaaggatgcagaaaggaattgattatgttaaaaga
aaaatacgtgaatttattcagaaagcctttgttagaaagcagaaagctttagatgaaatt
aaacctctcgaagatctaaataacaaaaaagacagctgtatttccaaccataccaccata
gaaataggcaaagacctcaattatctcaaagatggaaatggaactaccagtggcataggc
agcagtgtagaaaaatatgttgtggatgaaagtgattacatgtcctttataaacaacccc
agcctcactgtgactgtaccaattgctgtcggagaatctgactttgaaaatttaaatact
gaagaattcagcagcgagtcagatatggaggaaagcaaagagaagctaaatgcaactagt
tcatctgaaggcagcactgttgacataggagctcccgctgagggagaacaacctgaggtt
gaacctgaagaatctctggaacctgaagcctgttttacggaagactgtgtgcggaagttt
aagtgttgtcagataagcatagaagaaggcaaagggaaactctggtggaacttgagaaaa
acttgctataagatagtggagcataactggtttgaaaccttcattgtcttcatgattcta
ctcagcagtggggcactggcctttgaagatatatatattgaacagcgaaaaaccattaag
accatgttagaatatgctgacaaagttttcacttatatattcatcctggaaatgcttctc
aagtgggttgcatacggctttcaagtgtattttaccaatgcctggtgctggctagatttc
ctgattgtcgacgtctcattggttagcttaactgcaaatgctttgggttactcagaactt
ggtgccatcaaatccctcagaacactaagagctctgaggccattgagagccttatcccgg
tttgaaggaatgagggttgttgtcaatgctcttttaggagccattccatccataatgaat
gtacttctggtttgtctgatcttttggttaatattcagtatcatgggagtgaatctcttt
gctggcaagttttatcactgtattaactacaccactggagaaatgtttgatgtcagcgtg
gtcaacaactacagtgagtgtaaggccctcatagagagcaaccaaactgcccggtggaag
aacgtgaaagtcaattttgataatgtgggactcgggtatctttctctacttcaagtagcc
acatttaagggatggatggatatcatgtatgcagctgttgattcacgaaatgtagaatta
caacccaagtatgaagataatctgtacatgtatctttattttgtcatctttattattttt
ggttcattctttactctgaatcttttcattggtgtcatcatagataacttcaaccaacag
aaaaagaagtttggaggtcaagacatttttatgacagaagaacagaagaaatactacaat
gcaatgaaaaaactgggttcaaagaaaccacaaaaacccatacctcgacctgctaacaaa
tttcaagggatggtctttgattttgtaaccaaacaagtctttgatatcagtatcatgatc
ctcatctgcctcaacatggtcaccatgatggtagaaactgatgaccagagtcaagaaatg
acaaacattctgtactggattaatctggtgtttattgttctgttcactggagaatgtgtg
ctgaaactaatctctcttcgttattactatttcaccatcggatggaatatttttgatttt
gtggtggtcattctttccatcgtaggtatgtttctggctgagctgatagagaaatatttt
gtgtcccctaccctgttccgagtgatccgtcttgccaggattggccgaatcctgcgtctg
atcaaaggggccaaggggatccgcacgctgctctttgctttgatgatgtcccttcctgcg
ttgtttaacatcggcctcctgctcttcctggtcatgttcatctacgccatctttgggatg
tccaacttcgcctatgttaagagggaggttggaattgatgacatgttcaacttcgagacc
tttggcaacagcatgatctgccttttccagattaccacctctgctggctgggatggattg
ctagcacctattcttaacagtggacctccagactgtgaccctgaaaaagatcaccctggc
agctcagttaagggagattgtgggaacccatctgtggggatcttcttttttgtcagttac
atcatcatatcatttctggtcgtggtgaacatgtacatcgctgtcatcctggagaacttc
agtgttgctactgaagaaagtgcagagcccctgagtgaggatgactttgagatgttctac
gaggtttgggagaagtttgatcctgatgccacccagttcatagagttctccaagctctct
gattttgcggctgccctggatcctcctcttctcatagcaaaaccaaacaaagtccagctc
attgccatggatctgcccatggtcagtggggacaggatccactgcctcgacattttattt
gcctttacaaagcgtgttttgggtgagagtggagagatggatgcccttcgaatacagatg
gaagagagattcatggcatccaacccctccaaagtctcctatgagcccattacaaccact
ttgaaacgcaaacaagaggaggtgtctgctattgttatccagagggcttatagacgctac
ctcttgaagcaaaaagttaaaaaagtttcatgtatatataagaaggacaaaggtaaagaa
ggtgatggaacacccatcaaagaagatatcctcactgataaactaaatgagaattcaact
ccagagaaaaccgatgtgacaccttctaccacgtctccaccttcctatgacagtgtgacc
aaaccagaaaaagaaaaatttgaaaaagacaaatcagaaaaggaagacaaagggaaagat
atcagggaaagtaaaaagtaa
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