Phocoena sinus (vaquita): 116760531
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Entry
116760531 CDS
T07759
Symbol
CNTN1
Name
(RefSeq) contactin-1 isoform X1
KO
K06759
contactin 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04514
Cell adhesion molecule (CAM) interaction
psiu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
116760531 (CNTN1)
04517 IgSF CAM signaling
116760531 (CNTN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psiu04515
]
116760531 (CNTN1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
psiu00537
]
116760531 (CNTN1)
Cell adhesion molecules [BR:
psiu04515
]
Immunoglobulin superfamily
Contactins
116760531 (CNTN1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
psiu00537
]
Others
116760531 (CNTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Sp38
C2-set_2
ChitinaseA_N
Motif
Other DBs
NCBI-GeneID:
116760531
NCBI-ProteinID:
XP_032501372
Ensembl:
ENSPSNG00000020359
UniProt:
A0A8C9CRQ2
LinkDB
All DBs
Position
10:complement(71950502..72325344)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKMWLLVNHLVIVSFTTCLSEFTWHRRYGHGVSEEDKGFGPIFEEQPINTIYPEESPEGK
VSLNCRARASPFPVYKWRMNNGDIDLTSDRYSMVGGNLVINNPDKQKDAGVYYCLASNNY
GMVRSTEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF
ITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPLPERTTKPY
PADIVVQFKDIYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNI
QLEDEGTYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYWPCVATGKPIP
TIRWLKNGYLYHRGELRLYDVTFENAGMYQCIAENTHGAIYANAELKILALAPTFEMNPM
KKKILAAKGGRVIIECKPKAAPKPKFLWSKGTERLVNSSRIVIWEDGSLEINNITRNDGG
VYTCFVENNKGKANSTGTLVITDPTRIILAPINADITVGENATMQCAASFDPALDLTFVW
SFNGYVIDFNKENIHYQRNFMLDSNGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVV
RGPPGPPGGLRIEDIRATSVGLTWSRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPIIE
GNMEAARAVDLIPWMEYEFRVLATNTLGIGEPSIPSSKIKTDGAAPNVAPSDVGGGGGSN
RELTITWAPLSREYHYGNNFGYIVAFKPFDGEEWKKVTVTNPDTGRYVHKDETMRPSTAF
QVKVKAFNNKGDGPYSLTAIIHSAQDAPSEAPTAVGVKVLSSSEISVHWEHVVEKIVESY
QIRYWAVHDKEAAAHRVQVTSQEYSARLENLLPDTQYFMEVRACNSAGCGPPSDMIETFT
KKAPPSQPPRIISSVRSGSRYIITWDHVVALSNESTVTGYKVLYRPDGQHDGKLYSTHKH
SIEVPIPRDGEYVVEVRAHSDGGDGVVSQVKISGASILSPCLLGFLLPVLGILVYLEF
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgtggttgctggtcaatcaccttgtgattgtatcttttacaacctgtctatca
gagtttacatggcacagaaggtatggtcatggagtttctgaggaagacaaaggatttgga
ccaatttttgaagaacaaccaatcaataccatttatccagaggagtcaccggaaggaaaa
gtttcactaaactgtagggcacgagccagccctttcccagtttacaaatggagaatgaat
aatggggatattgatctgacaagtgatcggtacagtatggtaggaggaaaccttgttatc
aacaatcctgacaaacagaaagatgctggagtatattactgtttagcatcaaataactac
ggaatggtcagaagcactgaagcaaccttgagctttggatatcttgatcctttcccacct
gaggaacgtcccgaggtcagagtgaaagaagggaaaggaatggtgttgctctgtgaccct
ccataccatttcccagatgatcttagctaccgctggcttctaaatgaatttcctgtattt
atcacaatggataaacgaagatttgtgtctcagacaaatggcaatctctacattgctaat
gttgaggcatcagacaaagggaattattcctgctttgtatccagtccctctattacaaag
agtgtgttcagcaaatttatcccactcattccactacctgaacgaacaacaaaaccatat
cctgctgatattgtagttcagttcaaggacatatatgcattgatgggccaaaatgtgact
ttagagtgttttgcacttggcaatcctgttcctgatatccgttggcggaaggtcctagaa
ccaatgccaagcacggctgagatcagcacctctggagctgtcctgaagatcttcaatatt
cagctagaagatgaaggcacatatgaatgtgaggctgagaacattagaggaaaggataaa
caccaggcaagaatttatgttcaagcatttcctgagtgggtagaacacatcaatgacaca
gaggtggatataggcagtgatctctactggccttgtgtggccacagggaagcccatccct
accatccgatggctgaaaaatggatatttgtatcatagaggggaattgagactgtatgac
gtgacctttgaaaatgctggcatgtatcagtgcatagctgaaaatacacatggagccatt
tatgcaaacgcggagttgaagatcttggctttggctccaacttttgaaatgaatcctatg
aagaaaaagatcctggctgctaaaggaggaagagttataattgaatgcaaacctaaagct
gcacccaaaccaaaatttttatggagtaaaggtacagagcggcttgtcaatagcagcaga
atagtcatttgggaagatggcagcttggaaatcaataacattacaaggaatgatggaggt
gtctatacatgctttgtagaaaataataaagggaaggctaatagcactgggactcttgtt
atcacagatcccacacgaattatattggctccaattaatgccgatatcactgttggagaa
aatgcaaccatgcagtgtgccgcttcctttgatcctgcactggatctcacatttgtttgg
tccttcaatggctatgtgatcgactttaacaaagagaacattcattatcagcggaatttt
atgctggattccaatggggaactgctcatccgaaatgcccagctaaaacacgctgggagg
tacacgtgcaccgctcagacaattgtggacaattcttcagcctcagctgaccttgttgtg
cgaggccctccaggccctccaggtggtctgcgaatagaagacattagggccacttctgtg
ggacttacttggagccgtggttcagacaatcatagtcctatatctaaatacactatccag
accaagactattctttcagatgactggaaagatgcaaagacagatcctccgattattgaa
ggaaatatggaggcagcaagagcagttgatttaatcccgtggatggaatatgaatttcgt
gtgctagcaaccaatacattgggtataggagagcccagtataccatcaagcaaaattaag
acagatggtgctgcacctaatgtggctccttcagatgtaggaggtgggggtggaagcaac
agagaactgaccataacatgggcgcctttgtcaagagaataccactacggcaacaatttt
ggttacatagtggcatttaagccatttgatggggaagaatggaaaaaagtgacagttact
aacccagatactggccgctatgttcataaagatgagaccatgcgcccttccactgcattt
caagtcaaagtcaaagctttcaacaacaaaggagatggaccatacagcctcacagccatc
atccactccgcgcaagatgctcccagtgaagccccaacagcagtaggcgtaaaagtctta
tcatcttctgagatatctgttcattgggagcatgttgtagaaaaaatagtggaaagctat
cagattcggtactgggctgtccatgataaagaagcagctgcacacagagtgcaagtcact
agccaagaatactctgccaggctggagaaccttctgcctgacacccagtactttatggaa
gtcagagcctgcaatagcgcagggtgtggacctcccagtgatatgattgagaccttcacc
aagaaagcacctccaagccagcctccaaggatcatcagttccgtaaggtctggttcacgc
tacataatcacctgggatcatgtggttgcactatcaaatgaatccacagtgacaggatat
aaggtactctatagacctgatggccagcatgatggcaagctgtattcaactcataaacac
tccatagaagtcccaatccccagggatggagaatatgttgtagaggttcgtgcacacagt
gatggaggagatggagtggtgtctcaagtcaaaatttcaggtgcatccatcctatcacca
tgtcttcttggcttcctgctgcctgtccttggcatccttgtgtacttggaattctga
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