Phocoena sinus (vaquita): 116760854
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Entry
116760854 CDS
T07759
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116760854 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116760854 (PRPF40B)
Spliceosome [BR:
psiu03041
]
Complex A
U1 snRNP components
U1 related factors
116760854 (PRPF40B)
Complex B
116760854 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
116760854
NCBI-ProteinID:
XP_032502232
Ensembl:
ENSPSNG00000009876
LinkDB
All DBs
Position
10:complement(64043798..64064252)
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AA seq
893 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
MPPMLPPIGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKE
SRWTRPKDLDDLEALVKQEAAGKRQQPRTLQPQPSQPQPDPPPVPPGPTLVPTGLLEPEP
GGSEDCDVSEAAQPLEQGFLQQPEEGPSSSAGQRQPPQQEEEESKPEPERSGLSWSNREK
AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEE
ARLKAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFL
AKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKE
DALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWME
LYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTA
FEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRLRRREAAFRSMLR
QAVPAVELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLETECQHLHSKGRKHG
RKGKKHHHKRSHSPSGSESEDEELPPPSLRPPRRRRRNPSESGSEPSSSLDSVESGGAAL
GGRGSPSSRLLLGSDHGLRKVKKPKKRTKKRRHKSNSPESETDPEEKAGKESDEKEPEQD
KDRDLRRAELPNRSAGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgcctcctccaggaatccccccaccttttcctcca
atggggctccccccgatgagtcagagaccaccggccatcccccccatgccacctggcatc
atgcccccaatgcttccaccaataggggcgccaccaccactcacacagataccaggaatg
gtaccacccatgatgccagggatgctgatgccagcggtgcccgtcaccgcagcgacggct
ccaggtgcggacaccgccagctctgctgtggctgggacgggccctccgagggccctgtgg
agtgagcacgtggcccctgatgggcgcatctactactacaatgctgacgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggcagagctcctgctatcccagtgtccc
tggaaagagtacaagtcggacacaggcaaaccttactactataacaaccagagtaaggag
tcccgctggacccggcccaaggacctggatgacctggaggctctagtcaaacaagaggct
gcagggaaacggcagcagccacggacactacagcctcagccttctcagccacagcctgac
cccccacctgtgccgcctggccccaccttggtgcccacaggcctcctagaacctgagcca
ggtgggagtgaagattgcgatgtgtcagaggctgcccagcctctggagcaggggttcctg
cagcagccagaggagggccccagcagttctgctggacagcgtcagccaccacagcaggag
gaagaggaatcaaagccagaaccagagaggtctggcctcagttggagcaatcgggagaag
gcaaagcaggccttcaaggagctgctgagggataaggctgtcccctccaatgcttcgtgg
gaacaggccatgaagatggtggtcaccgacccccgttacagtgccttgcccaaactgagt
gagaaaaagcaggcattcaatgcctacaaggcgcagcgggagaaggaggagaaggaagag
gcccggctaaaagccaaggaggccaagcagaccttgcagcatttcttggagcagcatgag
cgcatgacctccaccacccgctaccggcgggcagaacagacctttggggagctggaggtc
tgggctgtggtccccgagagggatcgaaaagaggtttatgatgatgtccttttcttcctg
gccaagaaggagaaggaacaggccaagcagctccggcgccgcaacatccaggccctgaag
agcatcctggatgggatgagtagcgtcaacttccaaaccacatggtcccaggcccagcag
tacctcatggataaccccagctttgctcaggaccatcagctacagaacatggacaaggaa
gatgcgctgatctgctttgaggagcacatccgtgctttggagagggaggaggaggaggag
cgagagagggcccggcttcgggagcggcgccagcagcgcaagaaccgggaggcctttcag
accttcctggatgagctgcacgagacagggcagctgcactctatgtccacctggatggag
ctgtacccagcggtcagcactgatgtccgctttgccaacatgctgggccagccgggctcc
acccctctggacttattcaagttctatgtggaggagttgaaggcacgattccatgatgag
aagaagatcattaaggacatccttaaggaccggggcttctgcgtggaggtgaacacagcc
tttgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggatgcaggc
aacatcaagctgactttcaatagtctgctggagaaagcagaggcgcgggagagagagcgg
gagaaggaggaggcacgaaggctgcggcgcagagaagctgcctttcgaagcatgctgagg
caggctgtgcctgctgtggagctgggcactgcctgggaagaggtccgtgagcgctttgtg
tgcgactcagcctttgagcagatcaccctggagtcggagcggatccggctcttccgggag
ttcctgcaggtactggagactgaatgccagcacctccacagcaaaggccggaaacacggc
agaaagggcaaaaagcaccatcacaagcgttcccactcgccctcaggctctgagtcagaa
gatgaagagctgcccccaccatctctccggccccccaggcggaggcggcggaacccctca
gagtcaggctctgagccctcttcctcacttgattctgttgaaagtgggggtgctgccctt
ggaggacggggttccccatcctcccgccttctccttggatcagatcatggccttcggaaa
gtcaagaaaccaaaaaagagaactaagaagagaagacacaagtcgaacagtcctgagagc
gagacagaccctgaggagaaagcgggcaaggagagtgatgagaaagaaccagagcaggac
aaggacagggacctccggcgggcagagctccctaaccgctccgcaggctttggaatcaag
aaggagaagacgggctgggacacgtcggaaagcgagctgagcgagggtgagctggaaaga
cggcggcggacgctcctgcagcagctggatgaccaccagtga
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