Phocoena sinus (vaquita): 116763347
Help
Entry
116763347 CDS
T07759
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116763347 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116763347 (PNLDC1)
Enzymes [BR:
psiu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116763347 (PNLDC1)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116763347 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
116763347
NCBI-ProteinID:
XP_032506806
Ensembl:
ENSPSNG00000017839
UniProt:
A0A8C9E7B9
LinkDB
All DBs
Position
12:complement(7854038..7872983)
Genome browser
AA seq
531 aa
AA seq
DB search
MDVGADEFEQRLPLLQELVLGADFVGLDIEFTGLRSNPSGPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSMFSSIEGESNKYEAHSCNFFLFPTTFGILDSEFSFQASSVQFLNEHGF
DYNKFLKNGIPYMNEEQEKKIKHSILTGNWRVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGITGFRAFEVQLVLRKALPDIWTVMRDQGVTVKKVSKRHRWYLENTSCDRESCWQE
KILLSARGFSVFFQMLVKAQKPLVGHNMLMDLLHLHEKFFRPLPESYDEFKLNIHNLFPV
LIDTKSVAKDIWKELNFPRVSNLLEVYEVLNSDLNPTKNSGPVIIHASKCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLWKVHGVLPIPKPSFPLYLDVLAPYVNQVNLIRAGVPKIN
FSGPDHPSIRPPILIVTVKRWPGVSEQQVYREFQNLCKFDVRRLVGSHFLLLTNKFKDTR
SILKEYRCHPTLQVSLYRYWRHSPNVSCLLQVCGVVTTWAFIAFLLGRARP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggtgccgatgagttcgagcagaggctccctctgttgcaggagctcgtcctg
ggcgcggacttcgtgggtctagacatagagttcactggtcttcgttctaacccgtccggg
ccccagcagatcagtctgtttgacttgccatcagagtggtatctaaagacccgtcagagt
gttcagcagttcaccatctgtcagattggattgtctatgttttccagtattgaaggcgag
tccaacaagtatgaagcccattcgtgtaacttctttctcttccctacaacatttgggatt
ttggattcagagttctctttccaggcttctagtgttcagtttttgaatgagcatggcttc
gattataacaagtttctcaagaatggaatcccatatatgaacgaagaacaggagaagaaa
attaaacacagcatcctgactgggaactggagagttcgcagttctctggataaagatcaa
atcaaggtggtgattgacgaggtgacgcgctggctggacctggcagaggaaggcgactgg
atgaccctccctggtatcaccggcttccgggccttcgaggtccagcttgtgctgaggaag
gccctccctgacatctggacggtgatgagagaccagggggtgacagtgaagaaagtgagt
aaacggcatcgctggtatctggagaacacctcttgcgatcgagagagctgttggcaggag
aagattcttctctctgcgaggggtttttctgtgtttttccagatgctggtgaaagcccag
aagcccttagtgggacataatatgttgatggacctgctgcatctccacgagaagttcttc
agacctctcccagaaagctatgatgaatttaagctgaatatccacaacctatttcctgtt
ctcattgacaccaaaagtgtggcaaaggatatctggaaggaactgaatttcccaagggtt
tcaaatcttttagaagtttatgaagtactaaacagtgacttgaatcccaccaagaattct
gggccagtgattattcacgcaagcaaatgtgaaaaatacgttgagacaaagtatccccac
gaagcagcgtacgatgccttcctgtgcggatcagttcttttgaaagtggcccacttgctc
ctatggaaagtgcacggggttcttcccatccccaagccctccttcccgctgtacctcgat
gtgctggctccctatgtgaaccaggtgaatcttatccgagccggggtccccaagatcaat
ttttcgggtccagatcaccccagtatccgccctcccatcctcattgtcaccgtcaagagg
tggcccggggtcagcgagcagcaagtctaccgcgagtttcagaacctctgcaagtttgat
gtcaggagactggtggggagccacttccttcttctgaccaataagtttaaggacacccgg
agcatcctgaaggagtacaggtgccaccccaccctgcaggtctccctgtaccgctactgg
agacactccccgaacgtcagctgcctgttacaggtctgtggcgtagtcaccacctgggcc
tttatcgcgtttctcctgggaagagctcgcccctga
DBGET
integrated database retrieval system
