Phocoena sinus (vaquita): 116763458
Help
Entry
116763458 CDS
T07759
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04151
PI3K-Akt signaling pathway
psiu04510
Focal adhesion
psiu04512
ECM-receptor interaction
psiu04820
Cytoskeleton in muscle cells
psiu04974
Protein digestion and absorption
psiu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
116763458 (COL9A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116763458 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116763458 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116763458 (COL9A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116763458 (COL9A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
116763458 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
psiu00535
]
116763458 (COL9A1)
Proteoglycans [BR:
psiu00535
]
Extracellular matrix (ECM) proteoglycans
Others
116763458 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Toxin_R_bind_N
Laminin_G_3
Laminin_G_1
DUF4882
Motif
Other DBs
NCBI-GeneID:
116763458
NCBI-ProteinID:
XP_032507089
Ensembl:
ENSPSNG00000021000
LinkDB
All DBs
Position
12:83375897..83460065
Genome browser
AA seq
925 aa
AA seq
DB search
MKNFWKIPFLFFVCSFVGPWASATVKRRPRFPVSSNANGENELCPKVRIGQDDLPGFDLI
SQFQIDKAASRKAIQRVVGSTALQVAYKLGKKADFRIPTRQLYPSGLPEEYSFLTTFRMT
GSTLEKNWSVWQIQDSSGKEQVGVKINGETKSVAFSYKGLDGSLQTVTFSNLPSLFDSQW
HKIMIGVERSSATLFVDCNRIESLPIKPRGQIDVDGFAVLGKLVDNPQVSVPFELQWMLI
HCDPLRPRRETCQELPTRVTPSETTDLRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPPGDPGKPGAPGKPGTPGADGLTGPNGSPGSVGPRGQKGEPGVPGPRGFPGRGIP
GPPGPPGGAGLPGELGRVGPIGDPGRRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGGIGQVGAQGPPGAQGLRGITGIAGAK
GEKGARGLDGEPGPQGLPGAPGDQGRRGPLGETGPKGDRGAQGSRGIPGLPGPKGDTGLP
GVDGRDGIPGMPGTKGELGKPGPPGEAGLQGLPGIPGIPGAKGVAGEKGNTGAPGKPGQL
GNSGKPGRQGPPGEVGPRGPRGLPGSRGEEGPVGPPGLPGKLGSLGRPGFPGLPGPPGLP
GMKGDRGVVGEPGPKGEQGASGEEGELGERGELGDIGLPGPKGSAGSPGEPGLRGPEGSR
GLPGVEGPQGPPGPRGVQGEQGATGLPGIQGPPGRAPTDQHIKQVCMRVIREHFAEMAAS
LKRPDSGASGLPGRPGPPGPPGPPGENGFPGQMGLRGLPGMKGPPGALGLRGAKGDMGER
GDRGPPGRGPKGLPGTSGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPGPPGPPGF
CEPASCTLQAGQRAFNSKGPDPSKA
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacttctggaaaatcccatttctcttctttgtatgcagctttgtgggaccttgg
gcatccgcaactgtcaagcgccgcccaaggttccctgttagttcaaatgctaatggtgaa
aatgaactctgtccaaaggtcaggattggacaagatgatttaccagggtttgacctgatt
tctcagttccagatagataaagccgcatctagaaaagctatccagagggtagtggggtca
actgcattacaagtggcttacaaactgggaaagaaggcagacttcaggattccaaccagg
caattatatcccagtgggctgcctgaagaatattcctttctaaccacttttcggatgact
ggaagcacacttgaaaagaactggagcgtttggcagattcaagattcctcggggaaggag
caagttggcgtgaagattaatggcgaaacaaaatctgttgcattttcatacaagggactg
gacggaagtctccaaactgtgaccttttcgaatttgccctccttgtttgattcccagtgg
cataagatcatgattggcgtggaaaggagcagtgcaactctttttgttgactgcaacagg
atcgagtccttacctataaagccaagaggccagatcgacgtcgatggctttgctgtgctg
ggaaaacttgtggataatcctcaagtttctgttccgtttgaactccagtggatgctgatt
cattgtgacccactgcgacccaggagagaaacttgccaggagctgccaacgagggtaaca
cccagcgagaccaccgacctgaggggccccccgggtgagcagggtcctccggggccgccg
ggcccccctggagtccccggcatcgacggcatcgacggtgaccgaggtccgaagggtccc
ccgggccccccgggccccccgggagatccgggaaagccgggagctccgggcaaacctggc
acgccgggcgcagacggattaacgggacctaatggatctcctggctctgttggaccgaga
ggacagaagggagaacctggcgtgccgggacctcgtggatttccaggccgtggtattcct
ggacctcctggtcctcctgggggagcaggcctccccggagagcttggccgtgttggacca
attggtgaccctgggagaagaggaccaccgggcccccctggtcccccgggacccagcgga
acaattggctttcatgatggagatccattgtgtcccaattcctgtccaccgggtcgctct
ggatatccaggcctgccgggcatgaggggtcataaaggggctaaaggagagattggtgaa
cctggaagacaaggtcacaagggtgaagaaggagaccagggcggaattggacaggttgga
gctcaaggacctccgggagcccaaggtttgagaggcatcactggcatagctggggccaaa
ggggaaaaaggcgctcggggcttagatggagaacccggaccacaaggtctccctggtgca
cctggtgatcaagggcggcgaggacctctaggagaaacaggtcccaagggagacagaggg
gctcaaggttctcgaggaattcctggtctccctgggcccaagggtgacacgggcttgcca
ggtgtggatggccgggacgggatacctggaatgccgggaacaaagggtgaactagggaaa
cctggacctcctggggaagcagggttgcaggggttacctggtatacctggaattcctggc
gcaaagggtgttgccggtgaaaagggtaacacaggtgctccagggaagcccggtcaactg
gggaattcaggcaaaccgggccgccaggggccaccaggagaggtgggaccccgaggacct
cggggcctccctggcagtagaggtgaagaaggaccagtaggacccccaggactaccaggt
aaactgggttctctcggcagacctggcttccccggcttgcctggcccccctggacttcct
ggaatgaaaggtgacaggggcgtagttggtgaacctggtcctaagggtgaacagggtgcc
tctggtgaagagggagaactgggagaaaggggtgaactgggagatataggattacctggc
ccaaagggatctgcaggtagccccggggaacctggcttgaggggacccgaaggaagccgg
gggcttcctggggtggagggaccacaaggaccccctggcccgcgaggcgtgcagggagaa
cagggcgccaccggcctgcctgggatccagggccctccgggcagagcacccaccgatcag
cacattaagcaggtttgcatgcgagtcattcgagagcattttgctgagatggctgcaagt
ctcaagcgtccggactccggagcctcgggcctccccgggcggcctggcccccctggtccc
ccaggcccccctggagagaacggtttcccaggccagatgggacttcgaggcctcccgggc
atgaagggcccccccggggctcttggtttgaggggagcgaaaggtgacatgggggaaaga
ggtgatcgtggccccccaggaagaggtcccaaaggtttgcccgggacttcaggtctccca
ggtgacccaggtcctgccagctacgggaggaatggccgggatggtgagcgaggcccccca
ggggtggcaggcatccctggtgtacccggccccccgggacctcctggccctcctggtttc
tgcgagccagcctcctgcaccttacaggctgggcagcgggcatttaatagcaaaggtcca
gatccatcaaaggcttag
DBGET
integrated database retrieval system
