KEGG   Pseudomonas silvicola: LZ023_01400
Entry
LZ023_01400       CDS       T10729                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
psiv  Pseudomonas silvicola
Pathway
psiv02024  Quorum sensing
psiv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psiv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LZ023_01400 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LZ023_01400 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psiv03019]
    LZ023_01400 (hfq)
   03036 Chromosome and associated proteins [BR:psiv03036]
    LZ023_01400 (hfq)
Messenger RNA biogenesis [BR:psiv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LZ023_01400 (hfq)
Chromosome and associated proteins [BR:psiv03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LZ023_01400 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 Gag_p24_C
Other DBs
NCBI-ProteinID: WAH58275
LinkDB
Position
complement(316995..317255)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAVS
TVVPVRPIRLPSATESEHGDVEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaatacattgcgtaaagagaaggtc
ggcgtttcgatctacctcgttaacggtatcaagttgcaaggcaccatcgaatcgttcgac
cagttcgtgattctgctcaagaacaccgtaagccagatggtttacaagcacgctgtctcc
accgtcgttcctgtgcgcccgatccgtctgcctagcgcaaccgaatccgagcatggcgac
gtcgaaccaggtaacgcctga

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