Stutzerimonas stutzeri DSM 10701: PSJM300_02895
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Entry
PSJM300_02895 CDS
T02182
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSJM300_02895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psj03021
]
PSJM300_02895
Transcription machinery [BR:
psj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSJM300_02895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
CENP-B_dimeris
Motif
Other DBs
NCBI-ProteinID:
AFN76657
LinkDB
All DBs
Position
complement(644786..646639)
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AA seq
617 aa
AA seq
DB search
MSGKAQQQSRLKELIQRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEV
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDSILADYERVTTEGGRLSDILSGYIDPDDDGAAAPQE
VEPVTPQATAKPADDDKDDEEEDDSDSEEEEGDGGPDPEVARVRFGAVAEQLDVAKKALK
KHGRGSQQATDALQELATLFMPIKLIPKQYDALVQRVRDALSQIRAQERAIMQICVRDAR
MPRADFLRQFPNHETDLDWADQLAAGKSKYAEAIAARKEDIQSCQQKLIALEEECVLAIA
DIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQSPIDVAT
VESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPTRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgcctcaaagaattgatccagcgtggccgtgag
cagggttacctgacttacgccgaggtcaatgaccacctgccggaggatatttccgatccg
gaacaggtggaagatatcatccgcatgatcaatgacatgggcattaacgtattcgaggtt
gccccggatgcagatgccctgttgctggccgaagccgataccgatgaagccgccgccgaa
gaggccgccgcggctctcgctgccgtggaaacggatatcggccgcaccaccgaccccgtg
cgcatgtacatgcgtgaaatgggtacggtcgaactgctgacccgcgaaggcgagatcgaa
atcgccaaacgcatcgaggaaggcattcgcgaagtcatgagcgccatcgctcatttcccg
ggcacggtcgacagcattctcgccgattacgagcgcgtcaccaccgaaggtggccgcctg
tccgacatccttagcggctatatcgaccccgatgacgacggcgctgccgccccgcaggaa
gtcgagcccgtcacgcctcaggccactgcgaagccggccgacgacgacaaggatgacgag
gaagaagacgactcggacagcgaagaggaagaaggcgatggcggcccggacccggaagtt
gcccgcgtgcgcttcggtgccgttgccgagcaactggacgtcgccaagaaagccctgaag
aagcatggccgtggcagccagcaggcgactgacgctctgcaggaactggccaccctgttc
atgcccatcaagctcatccccaagcagtacgatgcgctggtccagcgtgtacgcgatgcc
ctgagccagatccgcgcccaggaacgcgccatcatgcagatctgcgtgcgcgatgcccgc
atgccgcgtgccgacttcctgcgccagttccccaaccacgagaccgacctcgactgggcc
gatcagctggctgccggcaagagcaaatacgccgaagccatcgccgcgcgcaaggaagac
atccagagctgccagcagaagctgatcgccctggaagaagaatgtgtactggccattgcc
gacatcaaggacatcaaccgccgcatgtccatcggtgaagccaaggctcgccgggcgaag
aaagagatggtcgaggccaacctgcgcctggtcatctccatcgccaagaagtacaccaac
cgcggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgtcgcggctacaagttctcgacctacgccacctggtggattcgc
caggcgatcactcgctccattgccgaccaggcgcggaccatccgcatcccggtgcacatg
atcgagacgatcaacaagctcaaccgcatctcccgtcaaatgctgcaggaaatgggccgc
gagcccacgcccgaagagctgggcgagcgcatggaaatgcccgaggacaagatccgcaag
gtcctgaagatcgccaaggaaccgatctccatggaaacccccatcggtgacgacgaagac
tcgcatctgggcgacttcatcgaagactccgccatgcaatcgccgatcgacgtggcgacc
gtggagagcctcaaggaagccacccgcgacgtcctctccggcctcaccgcacgggaagcc
aaggtcctgcgcatgcgcttcggtatcgacatgaacaccgaccacaccctcgaggaagtc
ggcaagcagttcgatgtcacccgcgagcgtatccgccagatcgaagccaaggcattgcgc
aagctgcgccacccgacacgaagcgagcatctgcgctccttcctcgacgagtga
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