Pseudoalteromonas sp. JSTW: GZH31_01705
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Entry
GZH31_01705 CDS
T10506
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psjs Pseudoalteromonas sp. JSTW
Pathway
psjs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psjs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GZH31_01705 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psjs03021
]
GZH31_01705 (rpoB)
03400 DNA repair and recombination proteins [BR:
psjs03400
]
GZH31_01705 (rpoB)
Enzymes [BR:
psjs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GZH31_01705 (rpoB)
Transcription machinery [BR:
psjs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GZH31_01705 (rpoB)
DNA repair and recombination proteins [BR:
psjs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GZH31_01705 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QLJ08605
LinkDB
All DBs
Position
350762..354787
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFLVPDADGDHGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNARVIPYRG
SWLDFEFDAKDNLYVRIDRRRKLPASIILRALEFSTEEILDIFFDTTAFEVTDGKVLMEL
VPSRLRGETAAFDIKGDDGEVLVEAGRRITARHIKNIEKKGINQLEVPHEYIIGRVVAKN
YVDESTGEIIANANDELSLELMAELVKAGHTKIDTLYINEVDSGAYMSDTLRIDTTSNRL
EALVEIYRMMRPGEPPTKDAAEALFDNLFFSEERYDLSTVGRMKFNSRVGYDTDTGPGTL
SKEDIVAVMKVLIAIRNGVGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVNGVVT
DEVDYLSAIEEGQFVIAQANSNLNDDNEFVDELIPCRHKGESTFMGKMDQQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTGIELTLAKDSGVTIVAKR
GGEVMYADASRIVVNVNEDERVPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVTRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVQEDRLTTIHIQELQCIA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEAGVLDRARKLLVDAGLNADTIASLNAEKLLTQSLAQEDKQSELEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGVGERIEEMMKEQRELHE
IRSFVKKVYDLGDCRQKVDIDSFSDDEVRRLAENLKGGLPIATPAFDGARESEIKDLLEL
GGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEN
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggatatacctttcttactgtcgacgcagttagaatcgtttaaaaaattcttagtc
cctgacgctgatggcgatcacggtttggaagctgctttccgttctgtgtttccgatcaaa
agctactcgggaaattctgagcttcaatacgtaagttatcgtattggtgagccagtattc
gatgtaaaagaatgtcaaattcgcggtgtgacttattctgctccacttcgcgtaaaattg
cgtcttgtggtgatggacaaagaagcaccaggcacagttaaagacattaaagagcaagaa
gtttacatgggcgaaattccgctcatgactgataccggtacctttgtaatcaatggtaca
gagcgtgttatcgtttctcagctacaccgtagccctggtgtattctttgataacgaccgc
ggtaaaactcactcgtcaggtaaagtactttataacgcgcgtgtaattccttaccgtggt
tcatggttagacttcgagtttgatgcaaaagataacctatatgtacgtattgaccgtcgt
cgtaaattaccggcgtcaattatcttacgtgcactagagttctctacagaagaaatctta
gatatcttcttcgatactactgcgtttgaagtaactgacggtaaagttcttatggaactt
gtgccttcacgtttacgtggtgaaactgccgcttttgatatcaaaggcgatgacggtgaa
gtccttgttgaagcgggtcgtcgtattactgcgcgtcacatcaagaacatcgagaaaaaa
ggtattaaccaattagaagtaccgcatgagtacatcattggtcgtgttgtagctaaaaac
tacgttgatgagtcaacgggtgagatcatcgctaacgcgaatgacgagctatcacttgag
ctaatggctgagttggttaaagcaggtcacactaagattgatacgttatatatcaatgaa
gttgacagcggcgcctacatgtcagatacccttcgtatcgacacaacaagcaaccgttta
gaagcattagtagaaatttatcgcatgatgcgcccaggcgagccaccgacgaaagacgcg
gctgaagccttatttgataacttgttcttctctgaagagcgttatgatttatcaacagtt
ggtcgtatgaagttcaatagccgtgtaggttatgacactgatacaggccctggcacatta
tcgaaagaagacatcgtagctgttatgaaagtgcttatcgctattcgtaacggtgttggc
gatgttgatgatatcgaccacttaggcaaccgtcgtatccgtagcgttggcgaaatggct
gagaatcaattccgtgttggtctagtacgtgtagaacgtgcagtacgtgagcgtttaagc
ttaggtgaccttgatgcggtaatgccacaagatcttattaacgctaagccaatttcggca
gcggttaaagagttcttcggttcgtctcagttatcacagttcatggaccaaaataacccg
ctttcagaagtaacgcataagcgtcgtatttctgcattaggcccgggtggtttaacacgt
gaacgtgctggcttcgaggtgcgagacgttcacgtaacccactatggtcgtgtatgtcca
atcgaaacacctgagggtccaaacatcggtctaattaactcattgtctacgtacgcacgt
acaaacgactatggtttcttagaaacaccttaccgtaaagtggtaaacggtgttgtaact
gatgaagttgattacctatcagccattgaagaaggtcagtttgtaatcgctcaggcgaac
tcaaacttgaacgatgacaatgagtttgttgatgaactaattccatgccgtcacaaaggt
gaatcaacctttatgggcaaaatggaccaacaatatatggacgtatcaccacaacaggtg
atctctgtagcggccgcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggttcaaacatgcaacgtcaagcagtaccgacacttatcgcggacaagccgctggta
ggtacaggtatcgagcttacactagcaaaagattctggtgtaacgatcgttgctaagcgt
ggtggtgaagtaatgtatgccgatgcaagccgcatcgttgtaaatgtaaatgaagatgag
cgcgttccaggtgaagcgggcatcgatatctacaaccttactaaatacacacgctcaaac
cagaatacatgtattaaccaaaaaccaacgtgtatggttggtgagccggttacacgtggc
gatgtgttagcagatggtccttcgactgacttaggtgacttagcactaggtcaaaacctt
cgcgtggcattcatgccatggaatggttataacttcgaggattcaatcctactatcagag
cgcgtagttcaagaagatcgtctaacgactatccacattcaagaactacaatgtatcgca
cgtgatactaaattaggtcctgaagagatcacagcagatatccctaacgtaggtgaatct
gcactaggcaagcttgatgaatcaggcgttgtttatatcggtgctgaagtaaaaggcggc
gatatcctagtaggtaaagtgactccgaaaggcgaaacgcaattaacaccagaagaaaag
ctactacgtgcgatcttcggtgagaaagcgtcagacgttaaagacagctctttacgtgta
ccaaactctgtaacaggtaccgtaatcgacgtacaagttttcacccgtgacggtgttgaa
aaagataagcgtgcgttagaagttgaagacatgcagcttcgcgaagcgaagaaagacttc
aacgaagagttccgtatcttagaagccggtgtattagaccgtgctcgtaagctacttgtt
gacgctggtctgaacgcagacacaattgcatcacttaatgctgaaaagctgcttactcaa
agccttgctcaagaagacaagcaatcagagcttgagcaactagctgcccagtacgatgag
cttaaagctgaatacgataagaagtttgaaaacaaacgtcgtaagatcactcagggtgat
gacttagcaccaggcgtacttaaaattgttaaagtatacctagctgttaaacgtcgtatc
caaccgggtgataagatggcgggtcgtcacggtaacaaaggtgttatctcgactatcgta
ccagtagaagatatgccatacgatgacaaaggtcgtacggtagacatcgttctgaacccg
ctaggtgtaccatcacgtatgaacatcggtcagatcctagaaacacacatgggtcttgct
gcacgtggtgtgggtgagcgcattgaagaaatgatgaaagagcagcgtgaactgcacgaa
atccgtagctttgttaagaaagtttacgatttaggtgattgtcgtcagaaagtcgatatc
gactcattctctgatgatgaagttcgtcgcttagctgaaaacttgaaaggtggtttaccg
atcgcaactccagcctttgatggtgctcgtgaaagcgaaatcaaagacttactagagctt
ggtggttatccaagaagcggtcaagttacactttatgatggccgtactggcgatcagttt
gaacgtcaagtaaccgttggttacatgtacatgctgaaacttaaccacttggttgatgac
aagatgcacgcgcgttcaactggttcttacagccttgttactcagcagccgctgggtggt
aaagcgcagttcggtggccagcgtttcggtgagatggaggtgtgggcactagaagcttac
ggtgctgcatatacactacaagaaatgctaacagtgaaatcggatgacgtgaacggtcgt
actaagatgtataagaacatcgtagatggtaaccataagatggaaccaggtatgccagaa
tcgttcaacgtattgttgaaagaaatccgctcactgggtatcaacatcgagttggaagaa
aattaa
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