Pseudomonas sp. KU43P: KU43P_48370
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Entry
KU43P_48370 CDS
T10397
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pskp Pseudomonas sp. KU43P
Pathway
pskp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pskp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KU43P_48370 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pskp03021
]
KU43P_48370 (rpoC)
03400 DNA repair and recombination proteins [BR:
pskp03400
]
KU43P_48370 (rpoC)
Enzymes [BR:
pskp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KU43P_48370 (rpoC)
Transcription machinery [BR:
pskp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KU43P_48370 (rpoC)
DNA repair and recombination proteins [BR:
pskp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KU43P_48370 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BBH48360
LinkDB
All DBs
Position
complement(5345707..5349906)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGSVTKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVVVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLAAEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggtaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagttgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgaacgcgtgctctac
ttcgagagctacgtcgttatcgacccaggcatgaccaccctggaaaagggccagttgctg
aacgacgagcagtacttcgaagcgctggaagagtttggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgctatcgacctggagcacgagattggccgc
ctgcgtgaagagattccgcagaccaattcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgact
gtcctgccagtactgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacctccgacctgaacgacctctatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgcctgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctggacaacggccgtcgcggtcgcgccatcactggttcgaac
aagcgtccgctgaagtccctggctgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacttgctcggtaagcgtgtggactactctggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagcccttc
attttcggcaagctggaaatgcgcggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgaactgccagaggtatgggacgttctcgctgaagtgattcgcgaacacccc
gtgctgctcaaccgtgctccgacccttcaccgtctgggtatccaggcgttcgagcctgtg
ctcatcgaaggtaaggccatccagctgcacccgctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagctcagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagctattaatgcc
aagggcgaaggtcgcgtatttgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcagccctgcacgcgaaaatcaaggtccgtatcaacgagaccgtgaatgaccgtgat
ggcagtgtcaccaagaacacccgtatcgtcgacaccaccgtcggccgtgcgctgctgttc
caggttgtaccggcaggcctgccgtacgatgtggtcaaccagccgatgaagaaaaaggcg
atctccaagcttatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gccgaccagttgatgtacaccggttttgcctattcgaccatttccggcgtttccatcggt
gtgaacgacttcgtcatcccggatgagaaagcccgcatcattggcaatgccacggatgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtccaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgagggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgcagcccagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgagacgccgatcact
gcgaacttccgtgaaggtctgagcgtactgcagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcactgaagactgcgaactccggttacctgactcgtcgtctg
gtagacgtcgcccaggatctggtcgtgaccgagatcgactgcggcactgaccagggcctg
gtcatgaccccgcacatcgaaggtggcgatgttgtagagccgctgggtgagcgtgtactg
ggtcgtgtaatcgcccgtgacgtgttcaagccgggcaccgaggacgttatcgttccggcc
ggcacgctggtcgacgagcagtgggtcgagttcatcgagctgaacagcatcgacgaagtt
gtcgtgcgttcgccgatcaactgcgaaacccgctacggtatctgtgccaagtgctacggt
cgtgacctggcgcgtggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgcg
cagtcgattggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacttcggctgctgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggtcgagcgtgccgatggcaacctggttgccgtatcgcgttccggt
gagctggccattgccgacgagttcggtcgtgagcgtgagcgttacaagctgccatacggt
gcggtgatttcggtcaaggaaggtgacaaggtcgaagctggcgcaatcgtcgccaagtgg
gatccgcacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgccagaccgacgagctgaccggcctgaccaacattgaa
gtgctggatgtcaaggatcgccctgccgcaggcaaggaaatccgtccggctatcaagatg
gtcgacgccaatggcaaggacctgtacctgccgggtaccgacgtacctgcccagtacttc
ctgccggcgaacgccttggtgggtgtggctgacggtgcacagatcggcgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccacgc
gttgccgacctgttcgaagcgcgccgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgtcgtctggtcattaccccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtaagcgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgagatctctgagtcgggtgattccagcttcatcaagggcgaccagatg
gaactgacccaggtgctggtagagaacgagcgtctcgccgccgaggacaagttcatctcg
aagttcacccgtgtgctgctgggtatcaccaaggcgtcgctgtcgaccgagtcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagagaacgtggtcgtgggtcgcctgatcccggccggt
actggtctggcctaccacagcgagcgcaagcgtcgccgtgatgccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa
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integrated database retrieval system
