Pseudarthrobacter sp. L1SW: KTR40_13410
Help
Entry
KTR40_13410 CDS
T10267
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psls Pseudarthrobacter sp. L1SW
Pathway
psls03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psls00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KTR40_13410 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psls03021
]
KTR40_13410 (rpoB)
03400 DNA repair and recombination proteins [BR:
psls03400
]
KTR40_13410 (rpoB)
Enzymes [BR:
psls01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KTR40_13410 (rpoB)
Transcription machinery [BR:
psls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KTR40_13410 (rpoB)
DNA repair and recombination proteins [BR:
psls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KTR40_13410 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UEL27601
LinkDB
All DBs
Position
complement(2909877..2913386)
Genome browser
AA seq
1169 aa
AA seq
DB search
MVASSTSNNETANTADSTDGATRRLSFAKIHEPLDVPNLLALQTDSFDWLVGNERWQARV
AKAVEENDLSVATTSGLSDIFEEISPIEDFQGTMSLSFSDPEFADPKYTMAECKDRDATY
SAPLYVKAEFMNNNTGEIKQQTVFMGDFPLMTEKGTFVVNGTERVVVSQLVRSPGAYFER
AADKTSDKDIFTAKIIPSRGAWFELEIDKRDQVGVRLDRKRKQSVTVLLKALGWTEGQIL
EEFGQYDSMRATLEKDATETREDALLDIYRKLRPGEPPTVEAAQSLLDNLYFNSKRYDLA
KVGRYKINRKLGIDRSLGDKEASVLHVEDIVAMIKFLVALHAGEKTIKGTRDGQEVDLRV
EIDDIDHFGNRRIRAVGELIENQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVA
AIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCP
IETPEGPNIGLIGSLASYGRINPFGFIETPYRLVKDGVVSDDVQYLTADDEAEVLIAQAN
APLDENKKFAEDTVLVRARGGGGEPVLVPAEDVEFMDVSPRQMVSVATALIPFLEHDDAN
RALMGANMQRQAVPLVRSEAPFVGTGMERAAAVDAGDVVIAKKAGVVTEVSAELVIMLND
DGTETNYRINKFARSNQGNCYNHRVLVNEGQRLEVGGIIADGPATDQGELALGKNLLVAF
MSWEGHNFEDAIILSQRIVAEDVLSSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLAG
LDERGIIHIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGE
SGTVIGVRVFDRDNDDELPPGVNQLVRVYVAAKRKITDGDKLAGRHGNKGVISKILPVED
MPFLADGTPVDIVLNPLGVPGRMNVGQVLETHLGWVAKTGWKIEGEPEWVKQLPNLPRES
GQTTVATPVFDGAREEEITGLLDSTNVTRDGERLINSSGKTRLFDGRSGEPFPDPISVGY
MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE
LLTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSTDGTTIEM
RDSDDAVFTAAEELGIDLSRAEPSSVEEV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgcctcgagcacctctaataacgaaaccgctaacaccgccgacagcactgatggt
gccactcgccggctctcattcgcaaagattcacgaacctcttgacgttccgaatctgctt
gccctccagacggacagcttcgactggctggtcggaaatgagcgctggcaggcacgcgta
gcgaaggctgtcgaagaaaacgatctcagcgtcgccaccacgtccggcctgtcggacatc
ttcgaagagatctccccgatcgaggacttccagggcaccatgtccctgagcttctccgat
ccggagttcgctgaccccaagtacaccatggccgagtgcaaggaccgggacgctacgtac
tcggctccgctgtacgtcaaggccgagttcatgaacaacaacacgggcgaaatcaagcag
cagaccgtgttcatgggtgacttcccgctgatgaccgagaagggcaccttcgtcgtcaac
ggcaccgagcgtgtcgttgtctcccagctggtccgttccccgggcgcctactttgagcgt
gccgctgacaagaccagcgacaaggacatcttcaccgcgaagatcatcccgtcccgcggc
gcctggttcgagctcgagatcgacaagcgcgaccaggtgggcgtgcgccttgaccgcaag
cgcaagcagtccgtcaccgtcctgctgaaggccctcggctggaccgaaggccagatcctc
gaagagttcggccagtacgactccatgcgggcaaccctggagaaggacgccaccgaaacc
cgcgaagacgcgttgctggacatctaccggaagctgcgcccgggcgagccgcccaccgtc
gaggctgcccagtcgctgctggacaacctgtacttcaactccaagcgctacgatctggcc
aaggttggccgctacaagatcaaccgcaagcttggcatcgaccgctcccttggcgacaag
gaagcctcggtcctgcacgttgaagacatcgttgccatgatcaagttcctcgtggcgctg
cacgccggcgagaagaccatcaagggcacccgcgatggccaggaagtggacctgcgcgtc
gaaatcgacgacatcgaccacttcggcaaccgccgcatccgcgccgtcggcgagctcatc
gagaaccaggtccgcaccggcctgtcccgcatggagcgcgttgtccgcgagcgtatgacc
acccaggacgtcgaggccatcacgccgcagaccctgatcaacatccgccccgtggtcgcc
gcgatcaaggagttcttcggaacctcccagctctcgcagttcatggaccagaacaacccg
ctctcgggtttgacccacaagcgccgcctgtcggcccttggcccgggtggtctgtcccgt
gaccgcgccggcatggaagtccgtgacgtgcacccgtcccactacggacgtatgtgcccc
atcgaaacgcctgaaggcccgaacattggcctgatcggttcgctggcatcctacggtcgc
atcaacccgttcggcttcatcgagaccccgtaccgcctggtcaaggacggcgttgtttcc
gacgacgtccagtacctgacggccgacgatgaggctgaggtgctgatcgcccaggccaac
gcgccgctggacgagaacaagaagttcgccgaagacaccgtcctggtgcgtgcccgcggt
ggtggaggcgagcctgtcctcgtgcccgccgaggacgtcgagttcatggacgtttccccg
cgccagatggtgtccgtggctacggccctgatcccgttccttgagcacgacgatgcaaac
cgagcactcatgggtgccaacatgcagcgccaggccgtgccgctggtccgttccgaggct
cccttcgtgggcaccggcatggagcgcgccgcagccgtcgacgccggtgacgttgtcatc
gcgaagaaggccggtgtggtcaccgaggtttccgccgagctcgtcatcatgcttaacgac
gacggcaccgagaccaactaccgcatcaacaagttcgcccgctccaaccagggcaactgc
tacaaccaccgtgtcctggtgaacgaaggccagcgcctggaagttggcggcatcatcgcc
gacggcccggcaacggaccagggtgagctcgccctcggtaagaacctgctcgtggcattc
atgtcatgggaaggccacaacttcgaggacgccatcatcctctcgcagcgcattgttgcc
gaggacgtcctttcctccatccacatcgaggagcacgagatcgatgcccgcgacaccaag
cttggtgccgaggaaatcacccgtgacatccccaacgtgtccgaggaagtcctggctggc
ctggacgagcgcggcatcatccacattggtgccgaggttgaggcaggggacatcctggtc
ggaaaggtcaccccgaagggtgaaaccgagctgaccccggaagagcgcctgctgcgcgcg
atcttcggtgagaagtcccgcgaagtccgcgacacctccctgaaggtgccgcacggcgag
tccggtacggtcatcggcgtgcgcgtcttcgaccgcgacaacgacgacgagctgcccccg
ggcgtcaaccagctggtccgcgtctacgtcgctgccaagcgcaagatcactgacggcgac
aagctcgccggccgccacggcaacaagggtgttatctccaagatcctccccgttgaggac
atgcccttccttgccgacggcacccccgttgatatcgtcctgaacccgctgggtgtcccg
ggccgtatgaacgtgggccaggtgctcgagacgcacctcggctgggttgccaagaccggc
tggaagatcgaaggcgagcccgagtgggtcaagcagctgccgaacctgccgcgcgagagt
ggccagaccactgttgcaacgccggtgttcgacggtgcccgcgaagaggaaatcacgggc
ctgctggactccaccaacgtgacccgcgacggcgaacgcctgatcaactcctccggcaag
acccgcctgttcgacggccgctccggcgagccgttcccggatccgatctcggtcggctac
atgtacatcctgaagctccaccacctggtggacgacaagatccacgcgcgctccactggc
ccgtactccatgatcacgcagcagccgctgggtggtaaggcacagttcggtggccagcgc
ttcggtgaaatggaagtgtgggcgctcgaagcttacggcgccgcctacacgctccaggag
ctcctcacgatcaagtctgacgacatccatggtcgcgtgaaggtctacgaagccatcgtg
aagggcgagaacatccccgagccgggtgttcccgagtccttcaaggtcttgatcaaggaa
atgcagtcgctgtgcctgaacgtggaagtcctctccacggacggaaccacaattgaaatg
cgtgactctgatgacgcagtcttcacggctgcggaggaactgggtatcgatctgtcccgc
gcagagcccagttccgtagaagaggtctaa
DBGET
integrated database retrieval system
