Pseudomonas sp. NS1(2017): CI807_03115
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Entry
CI807_03115 CDS
T11105
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psns Pseudomonas sp. NS1(2017)
Pathway
psns03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CI807_03115 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psns03021
]
CI807_03115 (rpoC)
03400 DNA repair and recombination proteins [BR:
psns03400
]
CI807_03115 (rpoC)
Enzymes [BR:
psns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CI807_03115 (rpoC)
Transcription machinery [BR:
psns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CI807_03115 (rpoC)
DNA repair and recombination proteins [BR:
psns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CI807_03115 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ASV35219
LinkDB
All DBs
Position
complement(642107..646306)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVSGTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGTDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLGAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagttgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgagctggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtattggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgacctggaacacgagattggccgc
ctgcgtgaagaaattccgcaaaccaactccgaaaccaagatcaagaaactgtccaagcgc
ctgaagttgatggaggccttccagggttccggcaacttgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccgctggtaccgttggacggtggtcgtttc
gcgacgtccgacctcaacgacctgtaccgccgcgtgatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gaagcggtcgacgccttgctcgacaacggtcgtcgtggccgcgctatcaccggttcgaac
aaacgtcctctgaaatccttggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaagatggcacttgagctgttcaagccattc
atcttcggcaagctggaaatgcgcggtctcgcgaccaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgcctgaggtttgggacgttctcgctgaagtgatccgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaatattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtgttcgctgacctgcaagaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggtcaaagtgcggatcaacgaaaccgtcaacgaccgtgat
ggcggcagcgtgagcggcacccgtatcgtcgacaccactgtcggccgtgcgctgctgtat
caagttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggctttgcttattcgaccatctccggcgtttccatcggc
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcaatgctgctactgatgaa
gtgaaagagatcgaaagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggttatcgaccgtcacggcgtggaagtcgatcaagagtccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgaaacgccgattaca
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaaccgctaactccggttacctgacgcgtcgtctg
gtagacgttgcacaagatctggttgtaaccgagatcgattgcggcaccgagcacggcctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgctgggtgagcgcgtattg
ggtcgtgttattgcccgtgacgtattcaagccaggtaccgaggaagttatcgttcctgct
ggcaccctggtagacgaaaagtgggtcgagttcatcgaactcaacagcatcgacgaagtg
atcgttcgctcgccgatcagctgcgaaacccgctacggcatttgcgccaagtgctacggc
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaaacacgttgagcgagtggatggtcacttggttgctgtgtcccgttccggt
gagctggcaatcgctgatgactacggtcgtgagcgcgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgcgaaagatcgtccagctgccggtaaagacatccgtcctgccgtgaagatg
gtcgatgacaatggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtagcggatggtgcgaagatcgcgatcggtgatgtt
atcgcgcgtatcccgcaagaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtaccgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgcctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattcaagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagagaacgagcgtctgggcgcggaagacaagtttgtctcc
aagttcacccgcgtgctgctgggtatcaccaaggcgtcgttgtccactgagtcgttcatc
tcggcggcctccttccaggagaccactcgcgtactgaccgaagcagcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggttgtgggtcgtctgatcccggccggt
accggtttggcttaccacagcgagcgtaagcgtcgccgtgatgctgacaagccgctgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactctagcggtaactga
DBGET
integrated database retrieval system
