Pseudomonas sp. NyZ201: ACPFMA_02875
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Entry
ACPFMA_02875 CDS
T11215
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psny Pseudomonas sp. NyZ201
Pathway
psny03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psny00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACPFMA_02875 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psny03021
]
ACPFMA_02875 (rpoB)
03400 DNA repair and recombination proteins [BR:
psny03400
]
ACPFMA_02875 (rpoB)
Enzymes [BR:
psny01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACPFMA_02875 (rpoB)
Transcription machinery [BR:
psny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACPFMA_02875 (rpoB)
DNA repair and recombination proteins [BR:
psny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACPFMA_02875 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
XRQ39440
LinkDB
All DBs
Position
650938..655011
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGDPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHVSGEK
LSLELVPQRLRGEVAVMDIQDETGKVIVEQGRRITARHINQIEKAGVKQLDVPMEYVLGR
TTAKAIVHPATGEILAECNTELTTELLIKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDDIVFLSAIEEADHVIAQASAAMNEKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVNKGD
VVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKAAELRKFLTEIYNEIGGVQEDLESFTDEEILTLAQNLKKGVPMATP
VFDGAKEREIKAMLKLADMPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcttatcgtgaattcctgcaa
gcgggagcgaccaaggatcagttccgcgacgtcggcctgcatgcggccttcaagtcggtt
ttcccgatcatcagctactccggcaatgctgccctggagtacgttggctatcgtctgggc
gatccggcgttcgatgtcaaggagtgcgtgctgcgtggcgtgacctatgccgttccgctg
cgggtgaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtgatcgtttcccagttgcaccgctccccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactcggcgcgcatc
attccttaccgcggctcctggctggacttcgagttcgatccgaaggactgcgtattcgtt
cgtatcgaccgtcgccgcaagctgccggcctcggtactgctgcgtgcgctgggctacagc
accgaagaagtactcaacaccttctacaccaccaacgtcttccacgtttccggcgagaag
ctgagcctggaacttgtgccgcagcgtctgcgtggtgaagtcgccgtgatggacatccag
gacgagaccggcaaggtcatcgtcgagcagggtcgtcgtatcactgcgcgtcacatcaac
cagatcgagaaagctggcgtcaagcaactggacgttccaatggaatacgtcctgggccgc
accaccgcaaaagcgatcgtgcacccggccaccggcgaaatcctggctgaatgcaacacc
gagctgaccaccgagctgctgatcaagatcgccaaggcccaggttgtccgcatcgaaacc
ctgtacaccaacgacatcgactgcggtccgttcatctcggataccttgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctaccgcatgatgcgtcctggcgagccg
ccaaccaaggatgccgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gatctgtccgcagtgggccgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgagcaaggaagatatcgtcgaggtcctgaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgttcgctgt
gtcggcgagatggccgagaaccagttccgtgttggcctggtgcgtgtagagcgtgcggtc
aaggaacgcctgtcgatggcggaaagcgaaggcctgatgcctcaggacctgatcaacgcc
aagcctgtagcggcggcggtgaaggagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgtcgtgtctccgcactcggccca
ggtggtctgacccgcgagcgcgccggcttcgaagtccgtgacgtacacccgacccactac
ggtcgtgtctgcccgatcgagacccctgaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcccgcaccaaccagtacggcttcctggaaagtccgtaccgcgtggtgaaa
gagggtgtggttaccgacgatatcgtgttcctgtcggcgatcgaagaagctgatcacgtc
attgcacaggcctcggccgcaatgaacgagaagaagcaactcatcgacgagctggtagct
gttcgtcacttgaacgaattcaccgtcaaggcacctgaagacgtgaccctgatggacgtt
tcgccgaagcaggtagtttcggtcgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcactcatgggttccaacatgcagcgtcaggctgtaccgaccctgcgcgcc
gacaagccgctggtaggtaccggcatggagcgcaacgttgcccgtgactccggtgtctgc
gtagttgctcgccgcggtggtgtgatcgactcggtcgacgccagccgtatcgttgttcgc
gttgccgacgacgaagtcgaaaccggtgaagccggtgtcgacatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtgaacaagggtgat
gtggtccagcgtggcgacatcatggccgacggtccgtccaccgacatgggtgaactggct
ctgggccagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggtccaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgcgtggctcgtgataccaagcttggcccagaggaaatcaccgcggacatcccg
aacgtgggtgaagctgcgctgaacaagctggacgaagccggtatcgtctacgtgggtgcc
gaagtcggcgccggcgacatcctggtcggcaaggtcacgccaaaaggcgaaacccagctg
actccggaagaaaaactgctgcgcgcgatcttcggcgagaaggccagcgacgttaaggac
acctccctgcgcgtgccaaccggcaccaaaggtactgtcatcgacgtacaggtcttcacc
cgtgatggcgtcgagcgtgacagccgtgcgctgtccatcgagaagatgcagctggacgag
atccgcaaggacctcaacgaagagttccgcatcgtcgaaggtgccaccttcgagcgtctg
cgttcggctctgaacggccaggtggtcgatggtggcgcgggcctgaagaaaggcaccgtg
atcaccgacgaagtcctggacggtctggagcacggccagtggttcaagctgcgcatggcg
gaagatgcgctgaacgaacagctggaaaaggctcagcagtacatcgtcgatcgccgtcgt
ctgctggatgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggct
ccaggcgtgctgaagatcgtcaaggtctacctggcaatccgccgtcgcatccagccaggc
gacaagatggccggtcgccacggtaacaagggtgtggtctcggtgatcatgccggtggaa
gacatgccgcacgacgccaacggtaccccggtcgacgtcgttctgaacccgttgggcgta
ccttcgcgtatgaacgtcggtcagatcctcgaaacccacctgggccttgcagccaagggc
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaaagccgccgaactgcgcaag
ttcctgaccgagatctacaacgagatcggtggtgtccaggaagacctggagtccttcact
gatgaagagatcctgacgctcgcgcagaacctgaagaagggcgtgccgatggcgaccccg
gtcttcgatggtgccaaggagcgtgagatcaaggccatgctgaaactggccgacatgccg
gaaagcggccagatggtgctgttcgacggtcgtaccggcaacaagttcgagcgtcctgtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcc
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtgtgggcgctggaagcatacggcgcggcatac
accctgcaggaaatgctcacagtgaagtcggacgacgtgaacggccggaccaagatgtac
aagaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
