Psychrobacter sp. G: PSYCG_08580
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Entry
PSYCG_08580 CDS
T02715
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pso
Psychrobacter sp. G
Pathway
pso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSYCG_08580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pso03400
]
PSYCG_08580
Enzymes [BR:
pso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSYCG_08580
DNA repair and recombination proteins [BR:
pso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSYCG_08580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGP49225
LinkDB
All DBs
Position
complement(1989596..1993327)
Genome browser
AA seq
1243 aa
AA seq
DB search
MPITALTDAFAPINQQLFPIQNAQRRWLAPVHGAVSSLWLASLVQAPIWNVAERLKVVVT
RDQNQLNQIETELAFCGVDAHVFPDWETLTYDELSPHQDIVSERINLLTDMPTSGVLLIS
VQALMHRVAPPSWLIGQHFDLSVGDQFDINTQRSLLAKAGYRAVDNVFEPGEFAVRGSII
DIFAMGQPFPLRLDLFDDEIETIRFFNPQTQRTLTVDDLKSMMSGNDSSMGKESLSLLHK
LPDISKPIKQFQILPAKEFPLDEGRETFRTNFAAMFPNSNSRKFELHKDVMAGIASSGLE
YYQPLFFDLKDWTVESSLFAYLPSDTLFITDELINEKQADYWSQIQRRYEERRHDIDKPI
VAPELLYLLSNTLNEHLNHYPRVILSARNELSTMNDASAIDETVLESPLQLSEQPQLDFV
QNKQQGLVTLSAQEPPQLAVNHQKAEPLTELLAFLELQAQTATPVLIVSETAGRREILIE
LFKGKIEIKAYDSFAAFLAADKSTGLNNKKLPQVGLTVAPIERGVYVPERLVLISETQLF
GRQVLQTRRRRQSGVSEEFLVKSVTEITDGSPVVHIEHGIGRYNGLITLDVGDGEQEFIH
LKYADDASIYVPVANLQMINRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLN
IQARREAKVGIHFKIDISQYELFASQFAFEETPDQANAIHAVMEDMKQNQPMDRLICGDV
GFGKTEVAMRAAFIAVSAGYQVAVLVPTTLLAGQHEDNFRDRFADWPVRIETLSRFGGKK
HQDTVLTDLAAGKVDIVIGTHKLLQPDVKFSNLGLMIVDEEHRFGVRHKERIKAIQTDVD
SMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIKTFVMQKTDALMKEAILRELLRGG
QVYLLHNDVASIERMAETIRELVPEARVGVAHGQMQERQLEQVMQQYYHKKFNVLICSTI
IETGIDVPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYCYLLVPSIKGLKGDAKRRL
HAIERANTLGAGFMLASEDLEIRGAGEILGKQQSGNMQAIGFSLYMDMLERATKAIKAGK
EPDLSTPLSLTSEINLHSSALIPEEYLHDVHQRLLFYKRIGNADDKEALTDIRTEMIDRF
GVLPEQTKQLFAVHGLRIQAEPLKINKIDANSNSMTLEFAPDTPVDALAIIKLIQANGQH
YRMNGASGIRYQDADKLATPQQRVTVIQELLSYFSKHMVVESV
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcactgctttgactgacgcctttgccccgattaaccagcaattattccctatc
caaaatgcccagcgccgctggcttgcacctgtacacggtgcagtcagcagcttatggctg
gcaagtttagtacaagcacctatatggaatgttgccgagcgtctaaaagtcgtagtgacg
cgtgaccaaaatcagctgaatcaaatagagacagaattggcgttttgcggcgtggatgct
catgtatttcctgattgggagacgctgacctatgatgagttgtcaccgcatcaagatatt
gtcagcgagcgtatcaatttattaactgatatgccaacgtcaggcgtgctattgatatct
gtgcaagcattaatgcaccgtgttgcgccaccaagctggttaattggacagcattttgat
ttaagtgttggcgatcaatttgatatcaatacccaacgtagcttattagcaaaagcaggt
tatcgagcggtagataatgtctttgagccgggggaatttgcggtacgtggtagtatcatt
gatatctttgccatgggtcagccattcccgctacgtctagatttattcgacgatgaaatt
gaaaccattcgcttttttaatccgcagacccaacggacattgaccgttgatgatttaaag
tcaatgatgagtggtaacgatagtagtatgggcaaagagtcattgtcgctactgcataaa
ctgccagatatctcaaagcctattaaacagtttcagatcctacccgcaaaagagtttcca
cttgatgaagggcgtgaaacctttcgtaccaattttgctgccatgttccccaatagcaat
agccgtaaattcgaattacataaagatgtaatggcgggcattgcgagtagcggactggaa
tattatcagccactgttttttgatttaaaagattggacggtagagagtagtttatttgct
tatctgccaagcgatacgctattcatcactgatgagctaattaacgagaaacaagcggat
tattggtcgcaaatccagcgccgctatgaagagcgtcgtcacgatattgataaacctatt
gtcgcccctgagttgctgtatttgttgtcaaatactcttaacgagcatctcaatcattat
ccacgggtgatactcagtgcacgtaatgaactgtcgacaatgaatgatgcatctgcgatt
gacgagacagtattggagagtccattacagttatctgagcaaccacagttagattttgtt
cagaataagcaacaaggattggtgactttaagtgcgcaagagccgccacagttggcggtc
aatcatcaaaaagcagagccacttactgagctgctagcgtttttagagctacaagcgcaa
acagcaacaccagtattgatagtatctgagacagcaggtcgtcgtgagattcttattgag
ctgtttaagggtaagattgagatcaaggcttatgatagttttgcagcatttttagctgcc
gataaaagcactgggcttaataataaaaagttgccacaggttgggctgacggttgcacct
attgaacgtggcgtctatgtgccagaacgtttggttctgattagtgagacacaattattt
ggtcggcaagtgctgcaaacgcgccgccgccgtcaaagtggtgtatcagaagagttcttg
gttaaaagcgtgactgaaataactgatggcagtccagtcgttcatattgagcatggcatt
ggacgttataatggtttaataaccttagatgtcggagatggtgagcaagaatttattcac
ttaaaatacgctgatgatgccagtatttacgtgccggttgccaatctgcaaatgattaat
cgctatagcggcggtgatcccgcgcttgcaccattgcacaagattggtagtggaaaatgg
gacaaagctaaacagaaagcgctcgagcaaatccatgatgtcgcagctgagttgcttaat
atacaagcacggcgtgaggcaaaggtcggtattcattttaaaatagatatctcgcaatac
gagctgtttgctagtcagtttgcctttgaagaaacgccggatcaagccaatgctattcat
gcagtcatggaagatatgaagcagaatcagcccatggatcgtctcatctgtggtgatgtg
ggttttggtaaaacggaagtagccatgcgcgcggcattcatcgcggtcagtgctggttat
caagtagcggtgctggtgccgacgactttgctggcaggtcagcatgaagacaattttcgt
gatcgttttgctgattggccagtacgtattgaaacgctttcgcgctttggcggtaaaaaa
catcaagacactgtgctaacagaccttgcggcaggcaaggttgatatcgtcattggtacg
cataagttattacagcccgatgtaaagttctctaatctaggtctaatgattgttgacgaa
gaacatcgctttggggtgcgccataaagagcgtattaaggcgattcagactgatgttgat
agtatgtcgatgacagcgacgcccatcccgagaacgctcaatatggcgctctcaggtatg
cgtgatatgtcgattattgccacgccaccagcccgtcgtcttgcgattaagacctttgtc
atgcagaagaccgatgctttaatgaaagaggctatcttgcgtgagctgttgcggggtggt
caggtttatctattgcataacgatgtggccagtattgagcgcatggcagagaccatacgt
gaactggtgcctgaagcgcgagtaggggtcgctcatgggcaaatgcaagagcgtcaacta
gaacaagtcatgcagcagtattatcataaaaaattcaatgtgctaatttgttcgaccatt
atcgaaactggtattgatgtaccgaatgctaataccattattatagagcgcgcggataag
tttggtttggctcaattacatcagctgcgtggtcgcgtgggtcgtagtcatcatcaagct
tattgctatttacttgtaccgtctatcaaggggcttaaaggagatgccaagcgccgattg
catgctattgagcgtgctaacacattaggtgcaggctttatgctggcaagtgaagattta
gagattcgcggtgctggggaaatacttggtaagcagcaaagtggtaatatgcaggcaatt
ggtttcagtctatatatggatatgctagagcgagcaacgaaggcgattaaagccggtaaa
gagcctgatttaagtacaccattatcgctaaccagcgaaatcaatctgcatagctcggca
ctgataccagaagagtatctgcatgatgtgcatcagcgtttgttattttataaacgtatt
ggtaatgccgatgataaagaggcactgactgatattcgaactgaaatgattgatcgtttt
ggtgttttgccagagcagaccaagcagttatttgcggttcatggtctacgcatacaagcc
gagcctttgaaaattaataaaattgatgccaatagtaatagcatgacattagagtttgca
cccgataccccggtcgatgctttggcgattattaaactaattcaagcaaatgggcagcac
tatcgtatgaatggtgcttctggcattcgctatcaggatgctgataaattggcaacaccg
cagcagcgtgtcacggtgattcaagagttattaagctattttagcaagcatatggtggta
gagtcggtttag
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