Pseudomonas solani: PSm6_14600
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Entry
PSm6_14600 CDS
T09213
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
psoa
Pseudomonas solani
Pathway
psoa02024
Quorum sensing
psoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSm6_14600 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PSm6_14600 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoa03019
]
PSm6_14600 (hfq)
03036 Chromosome and associated proteins [BR:
psoa03036
]
PSm6_14600 (hfq)
Messenger RNA biogenesis [BR:
psoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
PSm6_14600 (hfq)
Chromosome and associated proteins [BR:
psoa03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
PSm6_14600 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
BCD85053
UniProt:
A0AAU7Y118
LinkDB
All DBs
Position
complement(1561468..1561722)
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AA seq
84 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPSATEQENPEPGNA
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacctgaataccttgcgtaaggaacgcgta
ccggtttccatctatctggttaacggcatcaagctgcaaggccagatcgaatccttcgac
cagttcgtgattttgctgaagaacactgtcagccagatggtctacaagcacgcaatctcc
accgtggtaccgagccgccccgtgcgtctgccgagtgccaccgagcaagaaaaccccgag
cctggtaacgcctga
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