KEGG   Pseudomonas solani: PSm6_14600
Entry
PSm6_14600        CDS       T09213                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
psoa  Pseudomonas solani
Pathway
psoa02024  Quorum sensing
psoa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psoa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PSm6_14600 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PSm6_14600 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psoa03019]
    PSm6_14600 (hfq)
   03036 Chromosome and associated proteins [BR:psoa03036]
    PSm6_14600 (hfq)
Messenger RNA biogenesis [BR:psoa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PSm6_14600 (hfq)
Chromosome and associated proteins [BR:psoa03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PSm6_14600 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: BCD85053
UniProt: A0AAU7Y118
LinkDB
Position
complement(1561468..1561722)
AA seq 84 aa
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPSATEQENPEPGNA
NT seq 255 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacctgaataccttgcgtaaggaacgcgta
ccggtttccatctatctggttaacggcatcaagctgcaaggccagatcgaatccttcgac
cagttcgtgattttgctgaagaacactgtcagccagatggtctacaagcacgcaatctcc
accgtggtaccgagccgccccgtgcgtctgccgagtgccaccgagcaagaaaaccccgag
cctggtaacgcctga

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