Papaver somniferum (opium poppy): 113299619
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Entry
113299619 CDS
T05758
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113299619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113299619
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
113299619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_17
TPR_8
TPR_14
TPR_16
TPR_19
TPR_CcmH_CycH
TPR_12
TPR_9
TPR_6
NatA_aux_su
BTAD
TPR_MalT
TPR_10
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
113299619
NCBI-ProteinID:
XP_026404471
LinkDB
All DBs
Position
1:125365880..125374476
Genome browser
AA seq
1176 aa
AA seq
DB search
MKSEDNEEEGLLLLKQLQESVDSDPTNASHHYNLALFILENKQEEEDKAKAVEHLVISAK
LNPNNGSAFRLLGHYYSRFSIKDTSRASKCYQRSLTLNPDDFEAGEALCDLLSDDGKETL
EVAVCRDASEKSPRAFWAYRRLGYLLAHQKKWTEAVQNLQQAIRGYPTCADLWETLGLAY
QRLGMLTAAIKSYGQAIELEDTKIFALVESGNILLMLGSFRKGIEQFRQALDIAPHSVAA
HCGLASGMLGLAKECVNSGAFAWGASLLQEASDIAKASTGLSGNASCTWKLHGDIQLTLA
KCFPWMDGKMCIDYDEVAFRKSIASWKRSLYLAAVSASRSYQRALHLTPWKANIYADIAI
SMDLIRSMEERNEPKPISWQLPEKMSLGALFLEGDSSDFWVIFGCLSTHSPMKQHALIRG
LQLDASLATAWAYLGKLYRKVGEKQSTAQAFDHARSIDPALALPWAGISTEFGSGGCTLD
EAYESCLRAVQILPLAEFQIGLGNIAFLSGHLQSPQVFGAVCQAVHRAPHCPESHNLNGL
VHEARSDYQSAIACYRLARYAINCSVRKTPESHLSDISANLARAYYMAGNAVDSSRECEG
LKKEGLLDIRGLQIHALSLWKLGKNELALSVVRILAASISKMDNDTASASICLVCKLMYH
VSGLESASSSILKMPRELLKSSSMSFIVFVIHVLDHSNRLESVIPIGRESLTSDEEIAEM
HSLIALSKVVKTGLEQITDIQKGVHHLRKALHRYPHSSLLRNQLGYLLLSSKEWNDVHTA
PRCTVVESPGFHVVDGLVSAPEILGAAVVACNSSIPTCIDPCMHGRQTISQLQRWLHQEP
WNHTARYLLLLNFLQKAREERFPQHLCIILSRLVCVALSCEMYSKKDVAYQHQKFQLLLC
ASEISLQNGAHNDCIGHALDSLRLALPDSTRFFAHLVLCRAYAALEDFPKSQKEYMKCLE
LKTEHPVGLISLKLLESRFNLHIDTSTVNLKFEECLKEIGSSRNMWMAVFQLVLGQSYIW
DQDLLHAEEALAQGCSLVDTDSCLFLCHGVICMELAKQQSGSQFLSLSVSSLRRAQEVSP
IPLPIVSALLAQAEASLGSRGEWERNLRLEWFSWPSDTRPAELYFQMHLLARQLKGGPDS
SLGVGFHRTPQTWILRAIHVNPSCSRYWKLLYKTKV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcgaagataacgaagaagaaggtcttttattattgaagcaattgcaagaatcc
gttgattctgatcccaccaatgcatctcatcactacaatctcgcactattcatattggag
aacaaacaagaagaagaagacaaagcaaaagccgttgaacatttggttatctctgctaag
ttaaaccctaataatggttctgcatttcgattgttagggcattattatagtagattctct
atcaaagatacttcaagagcttctaagtgttaccaaagatcactcactcttaatccggat
gattttgaagctggggaagcactttgtgatttgttaagtgatgatggaaaggaaacattg
gaggttgctgtttgtcgcgatgcttcagagaagtcaccaagggccttttgggcgtatcgt
cgattaggatatttgctggctcatcagaagaaatggactgaagcagtacagaatcttcag
caggctatacgaggttatcctacttgtgcagatttgtgggaaactcttggtcttgcatac
cagcgattaggaatgttaactgctgctataaagtcatatgggcaagcaattgagctggag
gatactaaaattttcgcgttggttgaaagtggaaacatattgttgatgcttggctccttc
agaaagggcattgagcagtttcggcaggcattagatattgcacctcatagtgtagctgca
cactgtgggcttgcttcggggatgcttgggttggccaaggaatgtgtaaattctggtgca
tttgcttggggagcgtcactattgcaggaagcatctgatattgcaaaagcaagtactggc
ttatctggaaatgcttcttgtacgtggaagttgcatggtgatattcagcttacacttgca
aagtgttttccttggatggatggaaagatgtgcatagattatgatgaggtggcattcaga
aaatccatcgcttcctggaaaagaagtttgtatctggctgcagtttctgctagtcgttct
taccagcgagcattgcacttgaccccatggaaagctaatatctatgctgatattgcaatc
tctatggatctgattcgttcaatggaggagagaaatgaacctaaacccatttcttggcag
ctacctgagaaaatgtctttgggtgccttatttcttgagggagacagtagtgacttctgg
gtgattttcgggtgtttatccactcattctccaatgaagcaacatgctctgattaggggg
ttgcaattggatgcatctcttgcaaccgcatgggcataccttggaaagctgtacaggaaa
gtgggagagaaacaatcgactgcacaagccttcgaccatgctagaagcatagatcctgca
cttgcattaccatgggcaggcatttcaacagagtttggatccgggggatgcactctagat
gaggcttatgaaagctgccttcgggctgtgcagatattgcctcttgcggagttccaaatt
ggtcttggaaatattgcttttctttcaggacatctgcaatccccacaggtatttggagcc
gtttgccaggccgtgcatcgtgctcctcactgtcctgaatcacacaatttgaatggtctc
gtacatgaagcgagatctgattaccaatcagcaatcgcttgttacagattagcacgatat
gccatcaattgttctgtaagaaagacgcccgaatcccatctctctgatatttcagctaat
ctagccagagcgtattatatggcagggaatgctgttgattcttctcgtgaatgtgaaggt
ttgaagaaagaaggtcttcttgatatcaggggactgcagatacatgctctctctttgtgg
aaacttgggaagaatgagttagctctctcagtggttagaattcttgctgcaagcatttca
aagatggataatgatactgcttctgcttctatatgtttggtatgtaagttgatgtaccac
gtatcggggctcgaatcagcttcatcaagtattctgaaaatgccaagggaactgttaaaa
agttcaagtatgagttttatcgtatttgtgattcatgttctcgaccatagtaatcgtctt
gagtcggtcattccaattggtcgtgaatctctgacatctgatgaagaaatagctgaaatg
cattctttaattgcccttagtaaagttgtcaaaactggactagagcagatcacggatatt
cagaaaggtgtacatcacctgagaaaagctcttcacagataccctcacagtagtttgtta
aggaaccaactgggttatcttttactatccagcaaagaatggaatgatgttcatactgcg
ccaaggtgcactgttgtagagtctccgggtttccatgtggttgatggtctagtatcagca
cctgagattcttggtgctgcagttgttgcatgcaactccagcattccgacatgtatagac
ccctgcatgcatgggagacaaacaattagtcaactgcagagatggttgcatcaggagcct
tggaaccatactgcacgatacttgcttctacttaattttctgcagaaggctcgtgaagag
cggtttcctcagcatctttgtattatacttagtaggctagtttgtgtagctctctcttgt
gaaatgtattcaaagaaagatgtggcttaccagcatcaaaagttccagcttctactctgt
gcttctgagatcagtttacaaaatggagcgcacaacgactgcattggccatgctctggat
tcgttaagacttgcgctccctgatagcacccgcttttttgcgcacttggtactatgccgt
gcctatgcggcattggaggattttccgaaatctcagaaagagtatatgaaatgcttggag
ctaaagacagaacatccagttggtttgataagcctcaaacttctggagtccagatttaac
ctacatattgatacgagtaccgtgaacttgaaattcgaggagtgcttgaaagaaatcgga
agctcaagaaatatgtggatggcagtgtttcagttagtgttgggtcagagctatatttgg
gatcaagatctgcttcatgcagaagaggctcttgcacagggttgctcgttggttgatact
gatagttgcctctttctctgtcatggggttatctgtatggagcttgctaagcaacagtct
ggatctcagttcttgtctctctcagtctccagcctgcgcagagctcaagaggtatcaccc
attcctttacctattgtctcagcattgcttgctcaagcagaagcaagccttggctccaga
ggggagtgggagagaaaccttcgactcgaatggttttcctggccatcagacacgaggcct
gcagaattgtactttcaaatgcacttgctcgcacgacagctgaaaggtggtcctgactca
tctctcggtgttggttttcatcggacccctcagacatggattctgcgagcgatacatgtg
aacccatcctgttccagatattggaaattgttgtacaagacgaaggtttga
DBGET
integrated database retrieval system
