Papaver somniferum (opium poppy): 113327830
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Entry
113327830 CDS
T05758
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113327830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113327830
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113327830
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113327830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
113327830
NCBI-ProteinID:
XP_026430735
LinkDB
All DBs
Position
Unknown
AA seq
2452 aa
AA seq
DB search
MVPFGSTASTQIRFLLQSVNDSNFDSVFLELTQFIHYGLESSILLLQSCLDLHHFEGGLE
KSIENPNHILLGTIIRYLLSKPNFSTILCESLRRNSSSGDDNNNGPVVKSVYVLGPLVNH
LEFTVFERIAFGLALCDSEDVDVRRFGKSFCVSHIEEVLSAHHNGNGSIVDCSSEVIQSI
VLFLTRTEGVAKHVDSFMQLVALVETKSNWGSADLAVLSPLRSADNADERRNSDLFYSEN
DEFDDILEEIEKEMSMADIVKELGYGCTVNVSHCNEVLSLFLPLNEVTIARLLSTIARTH
GVLEEDSTHSTFCSALGLTSCDDPSLLSTWNVEVLVESIKQLAPYTDWIRVMENLDHEGL
CFPSESSFSFFMSVYRNACQDPFPLHAICGTVWNNVEGQISFLRYAVSASPEVFTFEHSA
RQLVYVDAVHGHKLTTGNANQAWICLDLFDVLCQLAETGHAGSVRLMLDYPLKHCPEVLL
LGLSQINTAYNLLQHEVLSAVFPMVVRNLSRAGVVLHLWNINPNVVLRGLLDVQNFDSEG
MIKTFDICQELKILSPVLDMAPFSFSIKLAALASGKGQINLDKWLNDNLSTYGDTLFEGC
LKFLKEIHVGVPHDVLQHSGAVVIAYLETVPIFIKVLLGHAGQNVSRHDQLEELKTLHAV
FIQNNTKLQNGEPANSSSPDGVYSDDVEGEANSFFHQMFSGQLSTDAMVQMLARFKESPD
KREQDIYNFMIGNLFEEYKFFPKYPERQLKIVAVLFGSLIKHQLVTHLLLGVALRAVLDA
LRKSADSKMFVFGAKALEQFVDRLIEWPQYCNHILQISHLRSTHSELVMFIECALASISS
SHAESNGGSVVPTDHQGLNPVPSHQGLNPVPPETMEVPESSWKVMGSGGSGTVQSRQQLP
LSPSPFQVQQRNQVSPDDRHKSAGQLQTIVSAHDGTQKASVAPPLATVLTQSAPTVPVPV
PNSTSFLRPSRGIPTASIPRQQSSTGFGSALNIETLVAAAERRDSPIEVPASETQDRILF
LINNISSSNFETKAKELTEVLNEEFYPWFAQYMVMKRASIEPNYHDQYLKFLDKVNSKVL
NKEIVKATYENCKVLLRSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKALI
IEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEIYALPNLKMNLKFDI
EVLLKNLGVEMKDVKPTSLLKDRVRELEGNPDFSNKDVTATKPQVIPEVNPPISVEPQPD
VVIPPHSGGLLTEDEKMPALTLPERLPSGQGLPVTPSQSPFSVSQLPTPIANIGTDVIVN
PKISALGLQLQFQRIVPMAMERAIKEIMSPVVQRSVTIAIQTTKELVLKDYAMESDETRI
YNAAHLMVASLAGSLAHVTCKEPLRVSISSHLRNMIQPLNVSNDLEQAVQISTNDNLDLG
CAVVEKAAIEKALQTIDGEIAGQLAVRRKRRDAVGPAYFDATTYTQGPMGGVPEALRPKP
GRLSLSQQRVYEDFVRFPWQNQPSQSSNALPAVQNSFAGGSGSSSLPRSYGLASGQPNPT
LYSSTQGDPGFGSVVQPPALASEDMDPASTQILSASSARIAASDVVTQHGSDVDSVVPLF
PSTIASTEPISVDPSDSTKDSGATAQPLPESFGTEHLSTSVGDLLSTEDVLEKYHIVAQN
LEDLISKDSKDVEVQGVIDEVPEIILRSVSRDEAAVVVARDVFKSLYGNTSNSTHVGAQI
AILVALRDVCKVAVKEQLTVLVIYSEDEYKFNKDIIVGLIRSELLNLAEYGMHMAKLIDA
GRNTTATEFAISLLQALVTQESGNGVSELHNLIEALAKLTTRPGSPESLPQLLEIARDVS
ANTSAPSGYMVSNDEKANQARDRKAPSARPSVSRGDDYNNVESMTADPHGFREQVSMLFK
EWYRISEAMGTNDVAVTRFVSQLQQSGLLKGDDMTDCFFRLLTELSVTHCLSTEVFTPGS
LSLQSSQQAPALSFVAIDMYAKLVILILKYCAVDQGSNKLFLLPKILLVTVRAIQKDADE
RKIAFNPRPYFRLFVNWLLDLGSPDSVLEGANFQILTAFANAFHALQPLKVPGFSYAWLE
LVSHRSFMPKLLYGNSQKTSPYVQRLLVDLFKFMEPYLRNAGKSQLGDPVHFLYKGTLRV
LLVLLHDFPEFLCNYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEI
SQSPCIFSDVDAAVKAKQMKGDIDEYLKTRQQGPSFLAELKQRVLLSQGEAALAGTRYNV
PLMNSLVLYVGMQAIQQLQTKTPPSPQMAHTAPMDIFLVGSAMDIFQTLIGDLDTEGRYL
FLNAVANQLRYPNNHTHYFSFVLLYLFAEANQEAVQEQITRVLLERLIVNRPHPWGLLIT
FIELIKNPRYNFWTCSFTRCAPEIEKLFESVSRSCGGPKTPDESLVSDGGAH
NT seq
7359 nt
NT seq
+upstream
nt +downstream
nt
atggttccattcggatcaacagcttcaactcagatacgattcttactccaatccgtaaac
gattccaacttcgattcagtattcctcgagttaacacaattcatccattacggtctcgaa
tcaagcatcttactactccaatcctgcttagatcttcatcatttcgaaggagggttggaa
aagagtattgaaaaccctaatcatattcttctcggcacgattatcaggtatctgttgtct
aaacctaatttcagtaccatattatgtgaatcgcttcgaagaaacagtagttcaggtgat
gataataacaatggtcctgttgtgaaatctgtgtatgttcttggacctctagtgaatcac
ttggaatttacagtttttgaaaggattgcatttggtcttgcattgtgtgattctgaagat
gtagatgttaggagatttgggaagagtttctgtgttagtcatattgaggaggtgttgagt
gcacatcataatggtaatggatcgattgtggattgttcgagtgaggtgattcagagtatt
gtgttgtttctgactcggaccgaaggtgttgcaaagcatgtggattcttttatgcagctg
gtggcgttggtggagacgaaaagtaattgggggagtgcggatttggcggtgttgtctccg
ttgcgtagtgcggataatgctgatgagaggaggaattcggatttgttttatagtgaaaat
gatgaatttgatgatattttggaggagatagagaaggagatgagcatggctgatattgtg
aaggaactgggttatggatgtactgttaatgtttcgcattgcaatgaagtgctgtctctg
tttttacctctgaatgaagttactatagcgaggttactcagcacaattgcacgcacacat
ggcgtcttggaggaggacagcacacattcaactttctgctctgcacttggattaacttcg
tgcgatgatccatcactgttgagcacgtggaatgtcgaagttcttgtagaatcgatcaag
caacttgctccttataccgactggattcgtgtgatggaaaaccttgaccacgagggtttg
tgctttcctagcgagagttcattttcttttttcatgtctgtttacagaaatgcatgccag
gatcccttccctcttcatgccatatgtgggactgtatggaacaatgttgaaggtcagata
tcttttctaagatatgctgtttctgcatcccctgaagtattcacgtttgagcactccgcc
agacaactggtgtatgtcgatgcagtccatggtcataagcttacaactggaaatgcaaat
caggcttggatatgtcttgacctgtttgatgttttatgccaacttgctgagacaggacat
gctggctccgttcggttaatgcttgattatcctcttaaacactgtcctgaagtgttgctg
cttgggttatcgcagattaatacggcttataacctacttcaacatgaagttctctcggct
gtttttcccatggtagtccgtaatttatcaagagcaggtgttgttctccacctatggaac
attaatcctaatgtcgtcttgcggggacttttagatgtccagaactttgactcggagggc
atgattaaaacttttgacatttgccaagagcttaagattctgtctccagtgttggatatg
gctccattttcattcagtataaagttggctgctcttgcttctggaaagggacaaataaat
ctggacaagtggttgaatgataatttaagcacatatggagacactttgtttgaagggtgc
ctcaagttcctcaaagagatccatgttggcgtaccccacgacgttcttcaacattctggt
gcagtagtaattgcttatttggagacagttcctatattcatcaaggttcttctaggtcat
gctgggcagaatgtctcacgtcatgatcaactcgaggaattgaaaacattacatgcagta
tttatccaaaataatactaaactgcagaatggtgaacctgccaattcatcttcacctgat
ggagtatattcagatgatgtagagggagaagctaattcattcttccaccagatgttctct
gggcagttgagcacagatgcaatggttcagatgcttgctcgtttcaaggagtctcctgac
aaaagagaacaagatatctataattttatgatcggaaatctgtttgaggagtacaagttt
ttcccaaaatatcctgaaaggcagcttaaaattgttgccgttctctttgggtctcttata
aagcaccagctcgtgacccatcttttgcttggcgttgctcttcgtgcagttttggatgcg
ttgcgtaaatctgcagattcaaaaatgtttgtgtttggggcgaaggcattggagcagttt
gtagatcgtttgatagagtggcctcaatattgcaatcacatcctgcaaatttctcactta
cgttcaacgcattcagagctcgttatgtttatcgagtgtgctcttgcctctatctcatcc
agccatgcggaatcaaatggaggtagtgttgttcctacagatcatcaaggactaaaccct
gttccctcgcatcaaggactaaatcccgttcccccggaaaccatggaggtccccgagtcg
tcgtggaaggtaatggggtctggcggcagcggcactgtacagtctaggcagcaactacct
ttatctccatctccatttcaggttcaacagcgaaatcaagtttctcctgatgacagacac
aaatccgctggacaactgcagacaattgtttcagcacatgatggtactcagaaggcgagt
gttgcaccaccattagctactgtgcttactcagagtgcgcccaccgtgcctgtccctgtg
ccaaactccacaagctttctgcgtccttctcgaggtataccgactgccagtatacctaga
caacagtctagcaccggctttggttctgcactaaacattgaaacacttgttgcggctgct
gaaagaagggatagtcccatcgaggttcctgcatctgagactcaagatagaatattattt
ttgattaataatatttcatcatcaaattttgaaaccaaagcaaaagagttgactgaggtt
ttaaacgaagagttttatccatggtttgctcaatatatggtgatgaaaagagctagcatt
gagcctaattaccatgatcagtatctgaagttcttagataaggttaattctaaggtcttg
aacaaggagattgttaaagctacttatgagaactgcaaggtcctactaagatcagagctt
attaagtctagttcagaagaacgctcattgctgaaaaatctcggtagttggcttgggaag
cttacaatcggcagaaaccaagtgctaagggctagggaaatagatccaaaagctctgata
attgaggcttatgagaaggggttgatgattgcagtgattcctttcacctcgaagattctg
gaaccatgccaatccagtcttgcatatcaacccccaaatccctggaccatgggaatactt
ggtttacttgctgagatttacgcactaccaaatctaaagatgaacctcaagtttgacatt
gaggtcttattgaagaatcttggcgttgaaatgaaagacgtcaagccgacctctcttctg
aaagatcgggttagggaacttgaaggaaatcctgacttctccaacaaagatgtcacggcc
accaagccccaagtaattcctgaagtcaatccgccaataagtgtcgagccacagccagat
gttgtgattccacctcattctgggggtctattaaccgaggatgaaaagatgccagcttta
actttaccagagcggcttccttctggccagggactaccagtcactccatcgcagtcacca
ttttctgttagtcagcttcccacaccaattgcaaacattggaaccgatgtcattgtcaac
ccaaagataagtgcgttgggtcttcagctgcagtttcagagaattgttcccatggcgatg
gaaagggccatcaaggagataatgtcccctgttgttcagcgaagtgttactatagcaatt
caaacaacgaaagaacttgttcttaaggactatgctatggagtccgatgagacccgcata
tataatgccgctcacctgatggttgccagtctcgctggaagtctagcacatgtcacctgc
aaggagcctctccgtgtttctatttctagtcacttgaggaatatgatccagcctttaaat
gtttccaatgaccttgaacaagctgtacagatcagtacgaacgacaatcttgatttgggt
tgtgctgtggttgaaaaagccgctattgagaaggcgttacaaacaattgacggtgaaatt
gctggacaactggctgtaagaaggaaacgaagagacgctgtaggtcctgcgtattttgac
gcaaccacttacacacagggtcctatgggtggagtgcctgaggcccttcgtccaaaacct
gggcgtttgtctctctcccagcaacgagtttatgaggattttgtaaggtttccatggcaa
aatcaacctagtcaaagttcaaatgcactgcctgctgttcaaaattcatttgctggtggt
tctggtagttccagcttgcctcgttcttatggcctggcttcaggtcagccaaatcctact
ttatattcaagtactcaaggagatccaggatttggttcagttgtgcaaccccctgctctt
gcttctgaggacatggaccccgcttcaacgcagattcttagcgcttcatcagctcgtatt
gcggcatctgatgtggtaacacaacatggttctgacgttgattctgttgttcctttgttt
ccttcaacaattgcttcaaccgaaccaatttctgttgatccctctgattctacgaaagat
tcaggagccactgcacaaccattacctgaaagttttggcacagagcacttaagcactagt
gtgggagaccttttatctaccgaggatgtgttagagaagtaccacattgtggcacaaaat
cttgaagaccttatatctaaagattctaaagatgttgaagttcagggagttattgatgag
gttcctgaaattatacttagatctgtaagccgggatgaggctgctgtggttgtggcccgt
gatgtttttaaaagtttatacgggaatacctcgaacagtactcatgtaggtgctcagatt
gcaattttggttgctcttcgagatgtttgtaaggttgccgtgaaggagcagcttacggtt
ttggtgatttactctgaagacgagtataagttcaacaaagatattattgttggcctcatt
cgttccgaactacttaaccttgcggagtacggtatgcacatggcaaagcttattgatgca
gggcgaaatacaaccgctacggagtttgcgatatctcttctacaggccttagttactcag
gaatctggaaatggtgtctctgagctccacaatctcatagaggcactggcaaagcttact
acaagacctggatcccctgaatctttaccacagcttcttgagattgccagggatgtctct
gctaacacctctgctccatcaggttatatggtgagcaacgatgagaaagctaatcaggct
agagacagaaaggctccatctgcacgtccatctgtaagtaggggggatgactacaataat
gttgagtctatgacagcagatcctcatggcttccgtgaacaagtttcgatgcttttcaaa
gaatggtaccgaatctctgaagctatgggtacaaatgatgttgctgtcactcgttttgtg
tcacagttgcagcaaagtggactgctcaaaggtgatgatatgacagattgttttttccgc
ctgctcaccgaattatcagtaacacactgcttgtcgactgaggtgtttactccaggctca
ctgtcgctgcaatcgtctcagcaagctccagctctgtcgtttgttgcgattgatatgtat
gctaaacttgtgattttgatcctgaagtattgtgcagttgatcagggatcaaataaacta
tttctcctccccaagattctgttggttactgtgagagctattcaaaaagatgctgatgag
agaaagatagcatttaatccaaggccatatttcagattgttcgtgaactggcttcttgat
cttggttctcctgactctgtgcttgagggtgctaactttcagattctgacagcatttgca
aatgctttccacgcattgcagcctctaaaagttcctggttttagttatgcgtggctggag
ttggtgagtcacaggagttttatgccaaaattgctttatggaaattctcagaagacttca
ccctatgtccagcgcttgcttgtagatttgttcaagttcatggagccgtacttgagaaat
gctggaaaatctcagcttggagatcctgttcacttcctctataaaggcactttgcgtgtt
ctgctggtgcttcttcatgattttccggagttcctctgcaattatcatttcagcttctgt
gatgtcatcccgccaagctgcatccaaatgcggaatgttattcttagtgcatttcctcgc
aacatgaggctgcctgacccttccaccccaaacttgaagattgatttgttagctgaaata
agccaatcaccatgcattttctccgatgttgatgcggcagttaaagcaaagcagatgaag
ggagatattgatgagtatctcaagacaaggcaacaaggaccgtcattcttggcagaactg
aagcagagagtgctgctttctcagggcgaggcagcacttgctgggaccaggtacaatgta
ccattgatgaattcccttgttctttatgttggcatgcaggctatccagcaactacagacc
aagacgccaccttcaccacagatggcacatactgctccaatggatattttcttggttggt
tctgcaatggatattttccaaactctgattggggatcttgacacagaaggtcggtacctc
ttcctcaatgcagttgcgaatcagttgcgttatcccaacaaccacacacactatttctcc
tttgtcctcctctacctatttgctgaagccaaccaggaagccgttcaggagcagataaca
agggttctattggaacgcctgattgtgaaccgtcctcatccatggggcttgcttatcact
tttattgagctgattaagaatcctagatataacttctggacttgctccttcacgagatgt
gcacccgaaattgaaaagctgtttgaatccgtctcaagatcttgtggggggccgaaaact
ccagacgagagtttggtatctgacggcggcgcacactga
DBGET
integrated database retrieval system
