Papaver somniferum (opium poppy): 113355466
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Entry
113355466 CDS
T05758
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113355466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113355466
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113355466
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113355466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
113355466
NCBI-ProteinID:
XP_026454114
LinkDB
All DBs
Position
3:20264519..20282062
Genome browser
AA seq
2290 aa
AA seq
DB search
MLPFASTASTQIRFLLHTCTDSNFDSIFPRLTQFVVDYGSEGSILLLETCLDQMNFYGGE
DNTSSINLKPQLLAAIFRYQLDKPNFSTVLCQALRNVTVPHEFLLRDVLNELKFSVSEKI
AFGLALSDSEELDIRSIGQSFCMSQIEELCANAGTIGSNEQIQNIVLFLSRSKGVAKLVD
SFIQMVSLLEMRNRAPLILSLLCNSDDTCEVNSLRQLDLFYASSENDFDDILAEIEKEMS
MADIVKELGYGCTVNATHCKDILSIFLPLTEVTICKILSTIARTHVGLEDLQSTHSTFCS
AVGISSFADSSSLSSWNVDALVESIKQLAPDTNWVHVMENLDHEGFYFPNEDSFTFFMSV
YASACQDPFPLHAICGAVWNNAEGQISFLRYAVSASPEIFTFVHSTRQLVYVDAVYGHKL
STGNGNQAWLCLDLLDVLCQLAETGHAGSVRSMLEYPLKHCPEVLLLGLSQTNTAYNLLQ
YEVLSSVFPMVLGNFSRAGVVLHLWNANPNVVLRGLLDVQNFDPESMIKTFAICQEFKIL
CPVLDMAPFSFSIKLAALSSVKEQINLEKWLSDKLSTYGDTFVEACLMFLKEIRLGVPQD
VPANSFQHSSAVVIAYLETVPIFIKVLLGHAGQNVSRHHLLEEMKNLHAVFIQNSTKLQT
GGAANSSSSDGGYPDDIEAESNCYFQEMFSGQLSIDAMVQMLARYKESPEKREQSIYECM
IRNLFEEYEFLPKYPERQLRIAAALFGSLIKHQLVTHLTLGSALRCVLDALRKSADLKMF
LFGVKALEQFVDRLIEWPQYCNHILQISHLRTTQLELVTFIERALATISSSHSELNGGNI
VPTDKHQGPNPVAVENMEVSESSWKIMGSSGSSTVQARAQPSLSPFQLQPLLHPAGQQQS
LVSTHDVVANTQKNAPSGPAAVPSTPGFLRPSRGIPSTSIPRQQSYSTGFGSALSIETLL
VAAERRETPIEVPEQETRDRILFMINNLSVANVETKAKEFTDVLKEEFYPWFAQYMVMKR
VSIELNFHDLYLKFLDKVNSRILNKEILKFTYENCKVLLRSELIKSSSEERSLLKNLGSW
LGKFTIGRNQALRAKEIAPKVLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTM
GILGLLAEIYALPNLKMNLKFDIEVLFKNLGVDMKDVKPTSLLKDRSREVEGNPDFSNKD
VTATQPLTIPEVNTLISVEPQPEIANSSLPGGHSNALPQYPTPHHSHNPLTKDEKMPASN
LPERLPPGQGLPVAPSQSPFSVSQLPTPIPNIGTDVIVNPKIALSLQMEFQRIVPVAMER
AIKEVMSPVVQRSVTIAIQTTKELVLKDYAMESDESRMYNAAHLMVASLAGSLAHVTCKE
PLRVSISSHLRNLIQALGPSSDFEQAVQISTNDNLDLGCAVVEKAAIEKALQTIDGEIAG
QLSVRRKHREAVGPAYFDATTYTQFPLSLVPEALRPKPGRLSLSQQRVYEDFVRFPWQNQ
PSQSTNALPAGQAASFTGDSGSSNLSRSNGPASGQLNSTVYSTVQGGPGFAQPLDLISED
MDPASAQTHSSSLAHIGAADVFMQHGSNRTSTVPSFPSTIISVEPISVDPSDSTKEDLGA
TTQPSPTSSATECLGAGTTDSISTGDALDKYQAVAQKVQPENLIAKDSTDVEVELGTKPG
SPESLPQLLEIARNASAYSPAPPGYIISKDEKGKLSRDRKVFPAPSIHSHVMDEESMAAD
PLGFREQVSMLFNEWYRICEATGKNDAAVTHFMSQLQQSGLLKGDDMTDHLFRLLTELSV
CHCLSTEGVVPGSLTLQSPQQVPVLSFIAVDTYAKLVILILKYCAVDQGSNKLFLLPKIL
LVTVRVIQKDADEKKTAFNPRPYFRLFVNWLLDLGSPDPVLEGANFQQILAAFANTFHAL
QPLRVPGFSFAWLELVSHRSFMPKLLYGNSQKTSLYVQRLLVDLFKFMEPYLRNAELGEP
GSLFCSSRAVHFLYKGTLRVLLVLLHDFPEFLCNYHFSFCDVIPPSCIQMRNVILSAFPR
NMRLPDPSTPNLKIDLLAEISQSPCIFSDVDAALKAKQMKSDIDEYLKTRQQGPSFLTGL
KQRVLLSQGEVPLARARYNVPLINSLVLYVGIQAIQQLQTKTSAPREPHTTPMDIFLVGS
AMDIFQTLIGDLDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAEANQEVVQEQITR
VLLERLIVNRPHPWGLLITFIELIKNPRYGFWTRSFTRCAPEIEKLFESVSRSCGGSKAV
DESLVSDGAH
NT seq
6873 nt
NT seq
+upstream
nt +downstream
nt
atgcttccattcgcgtcgactgcttcgacacagatacgattcttacttcacacctgtacc
gactccaacttcgactctatatttcctcggttaactcagtttgttgttgattatggaagt
gaaggaagtatactattacttgaaacctgtttagatcaaatgaatttttacggaggagaa
gataatacgagtagtattaacctaaaacctcaactattagctgctatctttagatatcaa
ttagataaaccaaacttcagtactgtattatgtcaggcgttacgaaatgtgactgttcct
catgagtttcttcttcgagatgtattgaatgagttaaaattctcagtttctgagaaaatt
gcatttggacttgctttatctgattcagaagagctcgacatcagaagtataggacaaagc
ttctgtatgagtcagattgaggaattatgtgcaaatgcgggtacgattggttcaaatgag
cagattcagaacattgttttgtttctgtctcggtcaaagggagttgcgaaacttgtggat
tcgtttattcaaatggtgtcactgttggagatgagaaatagggctccattgatattatct
ctattgtgtaattcggatgatacatgtgaagtcaactctctaagacaattggatttattc
tatgcgagcagcgaaaatgactttgatgacattttggcggagatagagaaggagatgagc
atggctgatattgtcaaggaactaggttatggctgcactgtcaacgccacccactgcaaa
gacatcttatcgattttcttacctctcactgaagtcacaatctgtaagatactaagcacg
atcgcacgcacccatgtcggcttggaggacttacagagcacacattcaactttctgttct
gctgttggaataagttcgtttgctgattcatcatcgttgagctcatggaatgtcgatgct
cttgtagaatcaatcaaacaacttgctcctgataccaactgggtacatgtgatggaaaac
cttgaccacgaaggcttctacttccctaatgaggattcgtttacttttttcatgtctgtt
tacgcaagtgcatgccaggatcccttccctctacatgccatttgtggggctgtgtggaac
aatgctgaaggtcagatatcttttctaagatatgctgtatctgcgtcgcctgaaattttc
acgtttgtgcactccaccagacagctggtgtacgtcgatgcagtatatggccataagctt
tcaactggaaatggaaatcaggcttggttatgtcttgacctgttggatgttttatgccaa
cttgctgagacgggccatgctggatctgtccgatcaatgctcgagtatcccctgaaacac
tgtcctgaagtcttgctgcttggattgtcccagactaatacggcttataacttacttcaa
tatgaagttctttcgagtgtttttcccatggtgctcgggaacttctcaagagctggtgtt
gttctccacctatggaatgctaatcctaatgttgtcttgcggggacttttagatgtccag
aacttcgatccggagagcatgatcaaaacttttgccatttgccaagagtttaagattcta
tgtccagtgttggatatggctccattttcattcagtataaagttggccgctctttcctct
gtgaaggaacaaataaatctagagaagtggttaagtgataaattgagcacatacggtgac
acttttgttgaagcgtgcctcatgttcctgaaagagatccgtttaggtgtaccccaagat
gttcctgcaaattcctttcaacattctagtgctgtagtaattgcttatctggagacagtt
ccgatattcattaaggttcttctaggtcatgctgggcagaatgtctcacgtcatcatctc
ctcgaggaaatgaaaaatcttcatgcagtatttatccaaaatagtactaaactgcagact
ggcggagcagccaattcatcttcatctgatggtggatatccagatgatatagaggcagag
tcaaattgttactttcaggagatgttctctgggcaattgagcatagatgcaatggttcaa
atgcttgctcgttacaaggagtctccagagaaaagggaacaatctatctatgaatgcatg
ataaggaatcttttcgaggagtacgagtttctcccaaaatatcctgaaaggcagctaaga
attgctgcagctctctttggatcgctaataaagcaccagcttgtgacccatctgaccctt
ggtagtgcccttcgatgtgttctggatgctttgcgtaaatctgctgatttgaaaatgttt
ttatttggggtgaaggcgctggagcagtttgtagatcgtttgatagagtggcctcagtat
tgcaatcatatcttgcaaatttctcatctacgtacaacccagttagagctggttactttc
attgagcgtgctcttgccacgatctcatccagccactctgaattaaacggaggcaacatt
gtccctacagataagcaccaaggaccaaatccagtcgcggtggaaaacatggaggtgtct
gagtcctcatggaagataatgggatctagcggcagcagcacagtgcaggctagagctcaa
ccatctttatctccgtttcagctccaaccacttttacatcctgccgggcagcagcagtca
cttgtttcaacccatgatgttgtagctaatactcagaagaatgcacccagtgggcctgcc
gctgtgccatccaccccaggttttctgcgtccatctcgaggcattccgtctaccagcata
cctagacagcaatcttacagcactggctttggctctgcattaagcattgaaacacttctt
gtggctgctgaaagaagggagactcccattgaggttcctgaacaagagactcgagataga
atattatttatgatcaataatctttcagtagcaaatgttgaaaccaaagcaaaagagttc
actgatgttctgaaggaagagttctatccatggtttgctcaatacatggtgatgaaaaga
gttagcattgaactcaatttccatgatctgtacctaaagttcttggataaagttaattcg
agaattttgaacaaggagattcttaaatttacatacgagaactgcaaggtccttctaaga
tccgagcttataaaatctagttcagaagaacgctcattgctaaaaaatcttggtagttgg
cttgggaagttcacgattggtagaaaccaagcattaagggctaaggaaatagctcccaaa
gtcctaataattgaggcttatgagaaaggtttgatgattgcagtaattccattcacctcg
aagattctggaaccatgccaatccagtcttgcatatcaacccccaaatccctggaccatg
ggaattctcggtttacttgctgagatttatgctctaccaaatctaaagatgaacctcaag
tttgacattgaggtcctatttaaaaatcttggagttgatatgaaagatgtgaagccgacc
tcgcttttgaaagatcggtccagggaagttgaaggaaatcctgacttctccaacaaagat
gtcacagccacccaacctctaactattcctgaagttaacacactgataagtgttgaacca
caacctgagattgcgaattcatctctccctgggggtcattcaaatgcattacctcagtat
cctactcctcatcattctcataatccgttgaccaaggatgaaaagatgccagcttcaaat
ctaccagagcggcttcctcctggacagggactgccagtcgctccgtctcagtcgccattt
tctgttagtcagcttcccacaccaattcctaacattggaaccgatgttattgtcaaccca
aagattgctttgagtctacagatggagtttcagagaattgttcccgtggcgatggaaagg
gccatcaaggaagtcatgtctcctgttgttcagcgcagtgttactatagcaattcaaaca
acgaaagaacttgttttaaaggactatgcaatggagtctgatgagagccgcatgtataat
gccgctcacctgatggttgccagtctcgcaggaagtttagcacatgttacctgcaaggag
cctcttcgtgtttctatttctagtcacttgaggaatttgatccaggctttaggtccttcc
agtgactttgaacaagctgtacagatcagtacgaatgataaccttgatttgggttgtgct
gtggttgaaaaggctgctatagagaaggcattacagacaattgacggggaaatagctgga
caactgtctgttagaaggaagcacagagaggctgtaggtccggcgtattttgacgcaact
acttacacacaatttcctctgagtttagtgcctgaggctcttcgtcctaaacctgggcgt
ttgtctctctcccagcagcgagtgtatgaggattttgtaaggtttccatggcaaaatcaa
cctagtcagagtacaaatgcactgcctgctggtcaagctgcttcatttactggggattct
ggtagttccaacttgtctcgttctaatggccctgcatcaggtcagctgaattctactgtt
tattcaactgtgcaaggaggtccaggatttgcgcaacccctggatctcatttctgaggac
atggaccctgcgtcggcgcagactcatagttcttcattggctcatataggggcggcagat
gtgtttatgcagcatggttctaaccgtacttctactgttccttcatttccttcaacaatt
atttccgtggaacctatttctgttgatccctctgattccacaaaagaggatttaggagct
actacacaaccatcacctacaagttctgcaacagagtgcttaggcgctggtacgacagac
tctatatctaccggggatgcgctagacaagtaccaagctgttgcacagaaggtacagcct
gaaaaccttatagctaaagattctacagatgtggaagttgagctaggcacaaaacctgga
tctcctgaatctttgccgcaacttcttgagattgcccggaatgcttctgcttattcccct
gctcctccaggatatataattagcaaggacgagaaaggaaaattgtcaagagacagaaag
gttttccctgctccctctattcattcacatgtaatggatgaggagtctatggcagcagat
cctcttggcttccgtgagcaggtttcaatgcttttcaatgaatggtaccggatctgtgaa
gctactggtaagaatgatgcagctgtcacccatttcatgtcacagttgcagcaaagtgga
ctgcttaaaggtgatgatatgacagatcacttattccgcctgctcacggaactatcagta
tgccactgcctgtccaccgagggggttgttccaggttcattgacacttcaatcacctcag
caagttccagttctgtcatttattgctgttgatacgtatgccaaacttgtaatactgatc
ctgaagtattgtgcagtggatcagggatcaaacaaactttttctcctccccaagattttg
ctggttactgtgagagttattcagaaagatgctgatgagaaaaagacagcatttaatcct
aggccttatttcagactgttcgtaaactggcttctggaccttggttctcctgaccctgtg
cttgagggtgccaactttcagcagattctggcagcattcgcaaataccttccacgcattg
cagcctcttagagtacccggttttagttttgcatggctggagctggtgagtcacaggagt
tttatgccaaaattgctatatggaaattcccagaagacttctctctatgtccagcgcttg
cttgtagatttgttcaagttcatggagccgtacttgagaaatgctgagcttggagaacct
ggaagcttattttgctcgagtcgtgcagttcacttcctctataaaggcactttgcgtgtt
ctactggtgcttcttcacgattttcctgagttcctttgcaattatcattttagcttctgc
gatgttatcccccccagctgcattcagatgcggaatgttattctcagtgcatttcctcgc
aacatgaggcttcctgatccttccactccaaacttgaagatcgatcttttagccgaaata
agccaatcgccatgcattttctctgatgttgatgctgctctaaaggcaaaacagatgaag
agtgatattgatgagtatctaaagactaggcaacaagggccatcattcttgacaggattg
aagcagagagtgctgctttctcagggcgaggtaccgctggctagggctcggtacaatgtt
ccattgatcaattctctagttctttatgttggcatacaggctatccagcaactacaaacc
aagacatcagccccacgtgagccgcatactacaccgatggatattttcttggtggggtct
gcgatggatattttccaaactctgataggggaccttgatacagaaggtcgctacctcttc
ttaaatgcggttgcaaatcagttacgctatcccaacaaccatacacactatttctccttt
gtcctcctctacctatttgctgaagccaaccaggaagtcgttcaggagcaaataacgagg
gttttactggagcgcttaattgttaatcgtcctcatccatggggtctgctcatcactttc
atagagctgatcaagaatcctcgatatggcttctggactcgctcattcacgagatgtgct
cccgagattgaaaagctttttgaatccgtctcaagatcttgtggtggctcaaaagctgtg
gacgagagtttggtatcggacggcgcacactga
DBGET
integrated database retrieval system
