Pseudomonas sp. Os17: POS17_5536
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Entry
POS17_5536 CDS
T04177
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psos
Pseudomonas sp. Os17
Pathway
psos03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
POS17_5536 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psos03021
]
POS17_5536 (rpoB)
03400 DNA repair and recombination proteins [BR:
psos03400
]
POS17_5536 (rpoB)
Enzymes [BR:
psos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
POS17_5536 (rpoB)
Transcription machinery [BR:
psos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
POS17_5536 (rpoB)
DNA repair and recombination proteins [BR:
psos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
POS17_5536 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BAQ77230
LinkDB
All DBs
Position
complement(6168203..6172276)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVKGES
LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELDVPLDYVLGR
TTAKAIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQEITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLANNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgttggagtatgtcggttatcgcctgggc
gaaccggcgtttgatgttaaagaatgcgtgttgcgtggtgtgacttacgccgtacctttg
cgggtaaaagtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttcccctggcgtattc
ttcgaccacgaccgtggcaagacgcacagctccggtaagctgctttactctgcgcggatc
attccgtaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtgttcgtc
cgtattgaccgtcgccgcaagctgcctgcgtcggttctgctgcgcgcgctgggttacacc
actgaagaagtgctggacgctttctacaccaccaacgtattccatgtgaaaggcgagagc
ctgagcctggagctggtgcctcagcgcctgcgtggtgaaattgccgttctggacatccag
gatgacaagggcaaggttattgtcgagcagggtcgtcgtatcaccgctcgtcacatcaac
cagctggaaaaagccggtatcaaggagctggatgtacctctggactatgtcctgggtcgt
accaccgccaaggctatcgtgcacccggctaccggcgaaatcctggcagagtgcaacacc
gagctgaacactgaaattctggcaaaaatcgccaaggctcaggttgttcgcatcgaaact
ctgtacaccaacgacatcgactgcggtccgttcgtttccgacactctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccgaccaaagatgcagccgagacgctgttcaacaacctgttcttcagccctgagcgctat
gacttgtccgccgttggccggatgaagttcaaccgtcggatcggtcgtaccgagatcgaa
ggttctggcgtgctgtgcaaagaagacatcgttgccgtactgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtgcgtgtagagcgtgcggtc
aaagagcgtctgtcgatggccgaaagcgaaggcctgatgccgcaagacctgatcaatgcc
aagccagtggcggcggcagtgaaagagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgtcgtgtctctgcactcggccca
ggtggtctgacccgcgagcgcgcaggctttgaggttcgtgacgtacacccgactcactac
ggtcgtgtatgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcgcgcaccaaccagtacggcttccttgagagcccgtaccgtgtagtgaaa
gacgctctggttaccgacgagattgtgttcctgtccgccatcgaagaggccgatcacgtg
atcgcccaggcttcggcgaccatgaacgacaaaggtcagctgatcgatgagctggtagct
gttcgtcacttgaacgaattcactgtcaaggcgccggaagacgtcaccttgatggacgtt
tcgccgaagcaggtagtttcggttgcagcgtcgctgatcccgttcctcgagcacgacgac
gccaaccgtgcattgatgggttccaacatgcagcgccaggctgtaccgacactgcgtgcc
gacaagccgctagtaggtaccggcatggagcgcaacgttgcccgtgactccggtgtttgc
gttgtggctcgccgtggcggcgtgatcgactcggtcgatgccagccgtatcgtggttcgt
gttgcggatgacgaagttgagactggcgaagccggtgttgatatctacaacctgaccaag
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgagaaagggtgat
cgggtacagcgcagcgacatcatggccgatggtccgtccaccgacatgggtgagctggca
ctgggtcagaacatgcgtatcgccttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgcgtggctcgtgacaccaagcttggcccagaggaaatcactgcagacatcccg
aacgtgggtgaggctgcactgaacaagctggacgaagccggtatcgtttatgtaggtgct
gaagttggcgcaggcgacatcctggtcggtaaggtcactccgaaaggcgagactcaactg
actccggaagagaagctgctgcgtgcgatcttcggtgagaaagccagcgacgttaaagac
acctccctgcgtgtgcctaccggtaccaagggtactgtcattgacgtacaggtcttcact
cgtgacggcgttgagcgtgacgctcgtgctctgtccatcgagaagagccagctcgacgag
atccgcaaggatctgaacgaagagttccgcatcgtggaaggcgcgaccttcgaacgtctg
cgctccgctctggtcggccataaagccgaaggcggcgccggtctgaagaaaggccaggaa
atcaccgacgaagttctcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgaccgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtctacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaactcacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgcatggttgaagagcagcgtaaggtggcggagctgcgcacc
ttcctggacgaaatctacaaccagatcggtggtcgcaacgaagacctggacagcttctcc
gatcaggagattctggatctggcgaacaacctgcgcggcggtgtgccaatggccactccg
gtgttcgacggcgccaaggaaagcgaaatcaaggccatgctgaaactggcggacctgcca
gagagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgtccagtt
accgttggctacatgtacatgctgaaactgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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