Polyodon spathula (Mississippi paddlefish): 121296140
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Entry
121296140 CDS
T07273
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
121296140
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121296140
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
121296140
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GFIT
Motif
Pfam:
cNMP_binding
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
121296140
NCBI-ProteinID:
XP_041077318
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Position
21:complement(3286414..3301944)
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AA seq
830 aa
AA seq
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MPKRNPDLELDHLVRESPQLPQSPSPSSRSSALELPNVPSYRACSPRLPPLGVQSQVSGV
VNHGFSKEARPPGRLRDGCKVSLHPAVNVEDVDSAEDSSSSPGSLTRPSIIHPPSAHAST
TLTVPGVPAAARRKKLYSQGDSVEETETTIKAWPSQCSLQPEEDDRSSSVTSQTSAIVNE
RLQELVKLFKGRTEKVKEKLIDPDSSSDEESPSASPTKKAPPPPPLPDEKKEEEKEEHYC
EMLCCKFKTMPWMMRLKEYRFPASIDPYTNLMYVLWLFFVTLAWNWNLWLIPVRWAFPYQ
TPDNLYLWLLMDYLCDLIYILDIFIFQSRLQFVRGGDIITDKKDMRENYMKSNRFKMDVI
SLFPLDLLYLKLGVLSVLRFPRLLKYSAFYEFNNRLEAILSKAYIYRVIITTGYLLYCLH
CNACLFYWASDYEGLGSTAWVYDGVGNSYIRCYYFAVKTLITIGGLPDPKTLFEIIFQLL
NYFIGVFAFSVMIGQMRDVVGAATAGQTYYRACMDSTINYMNLYKIPRSVQNRVKTWYDY
TWQSQGMLDEQELLVQLPDKMRLDIAVDVNYQIVAKVALFEGCDRQMIYDMLKRLKSVVY
LPGDFVCKKGEIGREMYIIKAGEVQVVGGPDGKTVFVTLRGGSVFGEISLLSVGGGNRRT
ANVMAHGFANLFILDKKDLNEILKHYPESQKVLRRKAKKMLTKDTKKAEMDEPKGVQHVI
PPRPETPKLLKAARALILKNRRSGSFSKLKMKKSSSVEPSTSMPVPPATPMHRCSPVPQT
RLVGDDEDTEDVVSETADGSMVLRMSPSHTDEEQVLTVEGVPKEKEGPKE
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagcgcaacccagacctggagttagaccacctagtccgtgaatcaccccaactc
cctcagagcccttccccctcctcccgcagcagtgcgctagagctccccaacgtcccgagc
taccgggcctgcagcccccgcctgccccccctcggagtccagagccaggtgtcaggggtg
gtgaaccacggcttctccaaggaagcgcgcccccccggccgcctaagagacggctgcaaa
gtgagcctgcacccggctgtaaatgtagaagatgtagactctgctgaagactccagcagc
agccccggatctctcactcgcccgtccatcattcacccgccgtcagcccacgcgagcacc
accctgaccgtgcctggggtccctgccgcagccaggagaaagaagctgtattcccaaggg
gacagtgtggaagagaccgagactacaatcaaagcctggcccagtcaatgcagtctgcaa
ccagaggaggacgaccggtcatcgtctgtgaccagccagaccagcgccatcgtgaacgag
aggctccaggagctggtcaagttgtttaagggccgaacggaaaaagtgaaggagaagctg
atcgaccctgacagcagctcagatgaggagagcccctctgcatctcccacgaagaaagct
ccaccacctcccccccttcctgatgagaagaaagaggaggagaaagaggagcattactgc
gagatgctgtgctgcaaattcaagaccatgccctggatgatgcggctgaaggaataccgc
ttccccgcgagcattgacccctacaccaatctgatgtacgtgctgtggctgttctttgtg
accttggcctggaactggaacctgtggctgatccccgtgcggtgggcgttcccctaccag
actcccgataacctttacctgtggctgctcatggactacctgtgtgatctcatctacatc
ctggatatcttcatcttccagtcccgtctgcagtttgtgcgcggcggggacattatcact
gacaaaaaggacatgagagaaaattatatgaaatcaaacagattcaagatggatgtgatt
tcccttttccccctggatctgctgtatttaaagctgggtgtgctgtcagtcctacgattc
ccacggttattaaaatatagtgccttctacgagtttaacaaccgtctcgaggcaattctg
agtaaagcatacatttacagagttatcataacgacgggctatttgctgtactgcctgcac
tgcaatgcctgcctcttttactgggcatcggactacgaaggtcttggatcaacagcatgg
gtttatgacggagtgggaaacagttatatccgctgttactactttgccgtgaagactctg
atcaccatcggggggctgcccgacccaaagaccctcttcgaaatcatcttccagctcctg
aactacttcatcggagtgttcgctttctctgtcatgattggtcagatgagagatgtcgtt
ggtgcagcgactgccggacagacttattacagagcctgcatggacagcaccatcaactac
atgaacttgtacaagatccctcgcagtgttcagaatcgggtcaagacctggtacgactac
acctggcagtcccagggcatgctggatgagcaggaactgctggtgcagctccctgataag
atgagactggacatcgctgtcgatgtcaattaccagatcgtagcaaaggtggcgctcttt
gagggttgtgaccgacagatgatttatgacatgctgaagcggttgaagtcagtggtgtac
ctgcctggggattttgtctgtaagaagggggaaattggaagggagatgtacatcatcaaa
gccggggaggtgcaggtggtaggggggccggatgggaagaccgtctttgttacactgcga
ggcggatctgtcttcggggaaatcagcctgctgtctgtaggaggagggaacaggcgcaca
gctaatgtgatggcacatggtttcgccaacctgttcatcctggacaaaaaggacctgaac
gagattctcaaacactaccccgaatcacagaaggtgctgcgcaggaaggccaaaaaaatg
ctaaccaaagacactaaaaaggcagagatggatgagccgaagggggtgcagcatgtgatc
ccccctagacctgagacccccaaactcttaaaagctgcacgtgcactcatccttaaaaac
agaaggagcgggtccttcagcaagcttaagatgaagaaatcaagctctgtggagccttcc
acctcgatgcccgtgccgcctgccaccccaatgcaccgctgctcgcccgtcccgcagacc
aggctggtgggtgatgatgaggatacggaggacgtggtgtcagagaccgcggacggctcc
atggtgctccggatgagcccttcacacacagacgaggagcaggtcctgactgtggaaggg
gtgcccaaagagaaagagggccccaaggaataa
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