Polyodon spathula (Mississippi paddlefish): 121296197
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Entry
121296197 CDS
T07273
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121296197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121296197
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121296197
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121296197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
121296197
NCBI-ProteinID:
XP_041077408
LinkDB
All DBs
Position
21:3183944..3210965
Genome browser
AA seq
2038 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVVFGLALLNSSSSDLKGFAAQFVKQKLPDLLRSYVDADIGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIEAFLKTLCRDFPQERCPVVLAPLLYPEKRDFLMDRIL
PDSGGLAKTMMESSLADFMQEVGYGFCTSLEECRNIIMQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKTDGSQAHTWNVEVLIDVVKELNPNLNFKEVTYE
LDHHGFIIRDSKALQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFVQHSLMNPDIFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLIESLLRLSEVGQYEQVKQLFNFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQASVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACMQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSVSPLQI
DPLSGMASLNISGSAASHTQSMQGFPTNLSSAFSNPQSPAKAFPALTNPSQTTPFSGIGG
LSSQLPGSLGSSSLTSMGSGLGIPTVNSDPFGQRKMSTSGLNPPTFQQSKIMPSDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASITHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQAQAQVPPKAPLPGQVSTIVTTSTTATVAKTTTITRPTGVSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMAQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNQDFIKMVLSETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGIITLSKNKPILYTDLEIKSLLLEAYVKGQQELLYVVPFIAKVLESSVRSM
IFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLK
ALDEQLSAPKKEAKPPEEMLPIVPPGEFLPFAAATSTPATTTTCTATGPPTPQFSYHDIN
VYALAGLAPHINFNQNIPLFQAHLQLKQYVRQAIERAVQELVHPVVDRSIKIAMTTCEQI
VRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIASNLKNSFATALRAPTQQ
QREMMEQAAAQIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDP
VVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQPA
WATDDVAQIYDKCIADLEQHLHAIPPALAMNPQTQALRSLLDAVVVARSSRETIAALGLL
QKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSQWCNKQITRCLIECRDEYK
YNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEA
DLFHTIETLMRTSAHSRANAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEY
DDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC
TEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINL
LNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFW
NT seq
6117 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggccttgtctcaaatcagttacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgacacggc
cccgaggcagacaggcatttattacgctgtctattctcgcatgtggattttagtggcgat
ggtaaaagcagcggcaaagattttcatcagacacagtttttgatccaggagtgtgtgtca
cttataaccaagccaaattttatctcgacgctgtcctacgctattgacaatccattacac
tatcagaagagtttaaaaccttcaccccatttgtttactcagctgagtaaagttctcaag
ttaagcaaggttcaagaggttgtttttggccttgcgttgttgaattcttccagctcagat
ctgaaagggtttgctgcccagtttgtgaaacagaagctccccgatcttctgcgttcgtac
gtagacgcggacattgggggtaaccaagaaggtggcttccaggatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctctggagtcggacag
gaacagattgaagctttcctcaagactctctgcagagattttccccaggagcgctgtcct
gtggtgcttgcaccactgctttaccctgaaaaacgggactttctgatggacaggatcctg
ccagactctggagggttagctaagaccatgatggagagttctctagcagactttatgcaa
gaagttggctacggcttttgtacaagtcttgaagaatgccgcaatataatcatgcagtat
ggagttcgggaggtcaccgcatcccaggtggccagagtcctgggcatgatggcccgcact
cactctggattgtctgatggcattccccttcagtccatctctgctcctggcagtgggatc
tggagtgatgggaaggataagactgatggatctcaggctcacacctggaatgtggaagtt
ttaattgatgttgttaaagaactgaatcccaatttgaacttcaaggaagtgacatacgaa
cttgatcatcatgggttcatcattcgggacagcaaggcactacagatagtggtgtatggt
atccaaaggggactgggaatggaagtgttccctgtggatctcatttacagaccttggaaa
catgcagagggccagctgtcttttgttcaacattccctgatgaacccagatatcttctgt
tttgcggattatccctgtcatactgttgctattgatattttaaaagcaccaccggaggat
gataaccgggaaatagcaacgtggaagagtctggacctaattgaaagtttgttacgtctg
tcagaggtggggcagtacgagcaggtgaaacagctctttaacttccccatcaagcactgt
cctgatatgttagttctggccttactacagataagtacctcctggcacacactgcgccat
gaacttatctctaccctcatgccaatcttcttgggaaaccatcccaactctgccattatt
ttgcactacgcttggcacggacagggtcagtcaccctctatccgtcaactgatcatgcac
tctatggcagagtggtatatgaggggagaacaatacgatcaggccaagctctctcgcatt
ctagatgtggctcaggacctgaagtctctatccatgctgctaaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcatctcgccgagaatacctcaaacttgacaaatgg
ctgacagataaaatacgggagcatggggaacctttcatccaggccagtgtgacattctta
aagcgacggtgcccttccatcatgggaggcctggctccagaaaaggagcagcccaaaagt
gcacagctccctcctgaaacactggctaccatgctggcctgtatgcagtcctgtgcaggg
agtgtttcccaggaactgtcagaaacaattctgaccatggtagcgaactgtagcaatgtc
atgaacaaagccagacaaccacccccaggagtcatgccaaagggacgtgctcctagcacc
agcagcttagatgctatctcccctgtacaggtatcggtctccgtctcccctcttcagatt
gatcccttgtctgggatggcatctctgaatataagtggctctgctgcgtcccacacgcag
agcatgcagggatttcccacaaacctgagttctgcattcagcaacccccagtcaccagcc
aaggctttccctgctctcaccaatcccagccagacaacaccattcagtggcattggaggc
ctctcatctcaacttccaggttctttaggatcgagtagcttgacaagcatgggaagtgga
cttggtataccaactgtgaacagtgacccttttggacagagaaagatgagcacatctgga
ttgaacccacccaccttccagcagagtaagataatgccttctgatctctctcaggtgtgg
cctgaggcaaaccagcactttagcaaagagattgatgatgaagccaacagctactttcag
cgcatttacaatcatccacctcaccccaccatgtccgtggatgaggtcctggagatgttg
cagaggttcaaggactccaacattaagcgggagcgtgaagtgtttaattgcatgctgagg
aacctatttgaggagtatcgtttcttccctcagtatcctgacaaggaactgcacatcact
gcctgcctctttggtggaatcattgagaagggactggtcacgtacatggcgctggggctg
gccctgcgctatgtccttgaagccttaaggaaaccatttggatccaagatgtattacttt
ggtatcgctgccctagatagatttaaaaatagattgaaggattatccccagtattgtcag
cacttggcatctattactcactttctacagttccctcatcatttacaggagtgtgtgcag
tatatcgagtatgggcaacagtcccgcgaccctccagtgaagatgcagggctcgatcact
acgcctggcagccttgctcttgcacaggctcaggctcaggctcaagtgccccccaaggct
cctctccctggccaggttagcaccatagtaacaacatctaccacagccactgttgctaaa
accactaccatcacccgccccactggagtcagcttcaagaaggatgtgcctccttccata
aacacaaccaacattgacacactgcttgtggccacagaccaaacagaaagaatagtggag
ccacctgaaaatgttcaagagaagattgccttcatctttaacaatctctctcagtccaat
atggcacaaaaggttgaagagctgaaggagaccgtgaaagaggagtttatgccttgggtt
tcgcaatatctcgtgatgaagagagtcagcattgagcccaactttcacagcctttactcc
aacttcctggatacactgaaaaaccaagattttatcaaaatggttctaagtgaaacctac
agaaatataaaggtcctactgacttccgataaagctgcagctaacttctctgatagatcc
ctcctgaagaacctgggccactggctgggcattatcacattgtcaaaaaacaaacccatc
ttgtatacagatttggaaataaagtctttgctgctggaagcttacgtgaagggacagcaa
gagcttctctatgtggtcccatttattgccaaagtgttggaatccagcgtgaggagtatg
attttcaggcctcagaacccatggactatggcaatcatgaatgtactggcagaacttcac
caggagcatgacttgaagctgaacctgaagtttgagattgaagtactgtgcaagaatctg
tccctggatatcaatgaccttaagcctggaaacctgctgaaagacaaagaaaagttgaag
gccctagatgagcagctttccgcaccaaagaaggaagctaaaccacctgaggaaatgcta
cccattgtcccacctggagaatttctcccctttgcagctgcaacgtctacacctgccaca
actactacatgcacagccacaggtccaccaactcctcagtttagttatcatgatattaat
gtctatgctctggcagggcttgctcctcacataaatttcaaccaaaatatacccttgttc
caggcccacctgcaactgaagcagtatgtgcggcaagctatagagagggcagtccaggag
cttgttcaccctgttgtggatcgctccatcaaaattgccatgaccacctgcgagcagatt
gtcaggaaggactttgctctggactctgaggagtcacgcatgcgtgttgccgcacatcat
atgatgcgtaacctgacagcagggatggctatgatcacctgtagggaacctctgctcatg
agcatcgctagcaatctgaagaacagctttgctacggccctcagggctccaacccaacaa
cagagggaaatgatggaacaggcagccgcacagatagcccaggataactgtgaacttgct
tgctgctttatacagaaaacagcagtggaaaaagctggcccagaaatggataagaggctc
gcaactgaatttgagctgcgaaaacatgccagacaagagggccgtcgatactgcgatcct
gtggtactgacctatcaagcagagcgcatgccagaacaaatcaggcttaaggtcggtggt
gtggaccctaagcagctggctgtttatgaggagtttgcacgcaatgttcccggtttcctt
cccagcaatgatctctcacagcccacaggtttcctggctcaacccatgaagcaaccagcc
tgggcaacagatgatgtggcacagatctatgacaagtgcattgctgatctggagcagcac
ttgcatgcaatccctcctgcgttggctatgaacccccagacgcaggccctgcgtagtctg
ctagacgctgtggtggtggcaaggagttcacgcgaaaccattgcagcattgggcttgcta
cagaaggctgtggaaggattactcgatgcgacaagtggtgctgatgcagacctcctgctc
cggtaccgtgagtgtcacctgttggttctgaaggccctgcaggatggccgtgcctatggc
tctcagtggtgcaacaagcagatcaccaggtgcttgattgaatgtcgtgacgagtacaaa
tacaatgttgaagctgtggagctgctgatcagaaaccatctggttaatatgcagcagtat
gacctacacctagcccagtcaatggaaaatggcctgcattatatggctgtggcgttcgct
atgcagttggtgaagttacttctggtggatgagaggagtgtgagccacatcactgaagct
gacctgttccacaccattgagacactcatgaggaccagtgcccactccagagcaaatgct
cctgaggggctgccccagctaatggaagtggtccggtcaaactatgaagcaatgattgac
cgtgcccacggagggcctaatttcatgatgcactctgggatctcgcaggcatcggaatat
gatgaccctcctggcctgagggagaaggcagagtacctactgagagaatgggtgaacctc
taccactctgcagctgccggtcgagacagcaccaaggctttctctgcctttgtgggacag
atgcaccagcagggaatcctgaagacagacgatctgataacccgtttcttccgactgtgc
acggagatgtgtgtggagatcagttaccgcgcacaggcagaacagcagcacaaccctgct
gccagtgctgccatcatccgtgccaagtgctaccataacctagatgcctttgttagactc
atcgcacttctagtcaaacactctggagaggcgactaacacagtgacgaagatcaaccta
ctcaacaaggttctgggtattgtggtcggagtccttattcaggaccatgatgtccggcag
actgagtttcaacaactgccctatcacagaattttcatcatgctgctgttggagttgaat
gcaccagagcatgtactggaaaccattaacttccagacattgactgctttctggtaa
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integrated database retrieval system
